Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
SOX2P48431 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
SOX2P48431 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
SOX2P48431 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC13.13□□□□□ -0.31
SOX2P48431 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC13.13□□□□□ -0.31
SOX2P48431 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC13.13□□□□□ -0.31
SOX2P48431 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC13.13□□□□□ -0.31
SOX2P48431 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 KRT8P14-201ENST00000414254 1442 ntBASIC13.13□□□□□ -0.31
SOX2P48431 KRT8P22-201ENST00000562317 1415 ntBASIC13.13□□□□□ -0.31
SOX2P48431 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
SOX2P48431 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
SOX2P48431 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
SOX2P48431 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC13.12□□□□□ -0.31
SOX2P48431 GOLGA8VP-201ENST00000559009 1798 ntBASIC13.12□□□□□ -0.31
SOX2P48431 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
SOX2P48431 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC13.12□□□□□ -0.31
SOX2P48431 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC13.12□□□□□ -0.31
SOX2P48431 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
SOX2P48431 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC13.12□□□□□ -0.31
SOX2P48431 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 MAPT-IT1-201ENST00000624111 3016 ntBASIC13.12□□□□□ -0.31
SOX2P48431 APP-205ENST00000358918 2366 ntTSL 5 BASIC13.12□□□□□ -0.31
SOX2P48431 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
SOX2P48431 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 BX842568.4-201ENST00000421222 227 ntBASIC13.12□□□□□ -0.31
SOX2P48431 COX10-202ENST00000429152 875 ntTSL 2 BASIC13.12□□□□□ -0.31
SOX2P48431 RAB35-202ENST00000534951 939 ntTSL 2 BASIC13.12□□□□□ -0.31
SOX2P48431 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
SOX2P48431 AC027612.4-201ENST00000605371 583 ntBASIC13.12□□□□□ -0.31
SOX2P48431 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC13.12□□□□□ -0.31
SOX2P48431 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC13.12□□□□□ -0.31
SOX2P48431 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC13.12□□□□□ -0.31
SOX2P48431 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 Z92544.3-201ENST00000624747 417 ntBASIC13.12□□□□□ -0.31
SOX2P48431 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
SOX2P48431 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC13.12□□□□□ -0.31
SOX2P48431 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
SOX2P48431 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
SOX2P48431 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
SOX2P48431 LSS-211ENST00000522411 2523 ntTSL 2 BASIC13.12□□□□□ -0.31
SOX2P48431 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC13.12□□□□□ -0.31
SOX2P48431 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
SOX2P48431 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC13.12□□□□□ -0.31
SOX2P48431 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC13.12□□□□□ -0.31
SOX2P48431 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
SOX2P48431 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
SOX2P48431 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC13.12□□□□□ -0.31
SOX2P48431 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC13.12□□□□□ -0.31
SOX2P48431 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC13.12□□□□□ -0.31
SOX2P48431 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 TUBB3P1-201ENST00000405796 1332 ntBASIC13.12□□□□□ -0.31
SOX2P48431 AC093525.8-201ENST00000624099 1342 ntBASIC13.12□□□□□ -0.31
SOX2P48431 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX2P48431 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
SOX2P48431 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
SOX2P48431 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC13.11□□□□□ -0.31
SOX2P48431 CLK3P2-201ENST00000427566 1453 ntBASIC13.11□□□□□ -0.31
SOX2P48431 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC13.11□□□□□ -0.31
SOX2P48431 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC13.11□□□□□ -0.31
SOX2P48431 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms