Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC15.36■□□□□ 0.05
PTPN9P43378 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
PTPN9P43378 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC15.36■□□□□ 0.05
PTPN9P43378 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
PTPN9P43378 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTPN9P43378 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PTPN9P43378 MIR326-201ENST00000362220 95 ntBASIC15.36■□□□□ 0.05
PTPN9P43378 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
PTPN9P43378 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTPN9P43378 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
PTPN9P43378 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PTPN9P43378 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
PTPN9P43378 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC15.36■□□□□ 0.05
PTPN9P43378 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PTPN9P43378 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC15.36■□□□□ 0.05
PTPN9P43378 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC15.36■□□□□ 0.05
PTPN9P43378 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC15.36■□□□□ 0.05
PTPN9P43378 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC15.36■□□□□ 0.05
PTPN9P43378 SORD2P-201ENST00000558556 1069 ntBASIC15.36■□□□□ 0.05
PTPN9P43378 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC15.36■□□□□ 0.05
PTPN9P43378 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC15.36■□□□□ 0.05
PTPN9P43378 AC133552.6-201ENST00000613406 534 ntBASIC15.36■□□□□ 0.05
PTPN9P43378 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTPN9P43378 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC15.36■□□□□ 0.05
PTPN9P43378 AL023775.1-201ENST00000454907 1746 ntBASIC15.36■□□□□ 0.05
PTPN9P43378 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTPN9P43378 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
PTPN9P43378 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC15.36■□□□□ 0.05
PTPN9P43378 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PTPN9P43378 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTPN9P43378 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTPN9P43378 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.36■□□□□ 0.05
PTPN9P43378 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PTPN9P43378 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTPN9P43378 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTPN9P43378 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC15.36■□□□□ 0.05
PTPN9P43378 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTPN9P43378 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTPN9P43378 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTPN9P43378 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTPN9P43378 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTPN9P43378 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.35■□□□□ 0.05
PTPN9P43378 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTPN9P43378 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTPN9P43378 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTPN9P43378 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTPN9P43378 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PTPN9P43378 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PTPN9P43378 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.35■□□□□ 0.05
PTPN9P43378 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.35■□□□□ 0.05
PTPN9P43378 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PTPN9P43378 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.35■□□□□ 0.05
PTPN9P43378 AC152010.1-201ENST00000415779 2006 ntBASIC15.35■□□□□ 0.05
PTPN9P43378 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PTPN9P43378 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC15.35■□□□□ 0.05
PTPN9P43378 AC079178.1-201ENST00000420915 656 ntBASIC15.35■□□□□ 0.05
PTPN9P43378 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC15.35■□□□□ 0.05
PTPN9P43378 YBX1P6-201ENST00000442962 1002 ntBASIC15.35■□□□□ 0.05
PTPN9P43378 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PTPN9P43378 KRT223P-202ENST00000449164 1292 ntBASIC15.35■□□□□ 0.05
PTPN9P43378 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
PTPN9P43378 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTPN9P43378 MIR6805-201ENST00000615055 62 ntBASIC15.35■□□□□ 0.05
PTPN9P43378 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PTPN9P43378 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC15.35■□□□□ 0.05
PTPN9P43378 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PTPN9P43378 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC15.35■□□□□ 0.05
PTPN9P43378 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTPN9P43378 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTPN9P43378 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTPN9P43378 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
PTPN9P43378 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTPN9P43378 AC015656.1-201ENST00000624209 3578 ntBASIC15.35■□□□□ 0.05
PTPN9P43378 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC15.35■□□□□ 0.05
PTPN9P43378 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC15.35■□□□□ 0.05
PTPN9P43378 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTPN9P43378 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.35■□□□□ 0.05
PTPN9P43378 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTPN9P43378 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.34■□□□□ 0.05
PTPN9P43378 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
PTPN9P43378 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.34■□□□□ 0.05
PTPN9P43378 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.34■□□□□ 0.05
PTPN9P43378 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC15.34■□□□□ 0.05
PTPN9P43378 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
PTPN9P43378 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
PTPN9P43378 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC15.34■□□□□ 0.05
PTPN9P43378 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
PTPN9P43378 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 ADK-205ENST00000539909 1866 ntTSL 2 BASIC15.34■□□□□ 0.05
PTPN9P43378 AC139749.1-202ENST00000617529 3139 ntBASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms