Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC16.6■□□□□ 0.25
CIITAP33076 SCARNA21-201ENST00000517026 139 ntBASIC16.6■□□□□ 0.25
CIITAP33076 EID1-202ENST00000560490 584 ntTSL 3 BASIC16.6■□□□□ 0.25
CIITAP33076 AC027237.1-201ENST00000560942 655 ntBASIC16.6■□□□□ 0.25
CIITAP33076 SNORD3B-2-202ENST00000571722 791 ntBASIC16.6■□□□□ 0.25
CIITAP33076 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC16.6■□□□□ 0.25
CIITAP33076 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CIITAP33076 MIR6787-201ENST00000616675 61 ntBASIC16.6■□□□□ 0.25
CIITAP33076 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
CIITAP33076 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CIITAP33076 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 CYP4F23P-201ENST00000593402 1579 ntBASIC16.6■□□□□ 0.25
CIITAP33076 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CIITAP33076 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CIITAP33076 AMT-204ENST00000427987 1646 ntTSL 5 BASIC16.59■□□□□ 0.25
CIITAP33076 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC16.59■□□□□ 0.25
CIITAP33076 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CIITAP33076 FAS-202ENST00000352159 1722 ntTSL 5 BASIC16.59■□□□□ 0.25
CIITAP33076 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CIITAP33076 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
CIITAP33076 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CIITAP33076 AC215219.1-201ENST00000400706 1817 ntBASIC16.59■□□□□ 0.25
CIITAP33076 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.59■□□□□ 0.25
CIITAP33076 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CIITAP33076 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CIITAP33076 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CIITAP33076 AGER-203ENST00000375065 665 ntTSL 2 BASIC16.59■□□□□ 0.25
CIITAP33076 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CIITAP33076 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC16.59■□□□□ 0.25
CIITAP33076 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC16.59■□□□□ 0.25
CIITAP33076 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC16.59■□□□□ 0.25
CIITAP33076 BX284668.4-201ENST00000453917 508 ntBASIC16.59■□□□□ 0.25
CIITAP33076 AC006122.1-201ENST00000493323 440 ntBASIC16.59■□□□□ 0.25
CIITAP33076 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC16.59■□□□□ 0.25
CIITAP33076 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC16.59■□□□□ 0.25
CIITAP33076 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC16.59■□□□□ 0.25
CIITAP33076 RBM8B-201ENST00000555532 525 ntBASIC16.59■□□□□ 0.25
CIITAP33076 SORD2P-201ENST00000558556 1069 ntBASIC16.59■□□□□ 0.25
CIITAP33076 AC090164.2-201ENST00000611487 516 ntBASIC16.59■□□□□ 0.25
CIITAP33076 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC16.59■□□□□ 0.25
CIITAP33076 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
CIITAP33076 GPR182-203ENST00000622922 591 ntBASIC16.59■□□□□ 0.25
CIITAP33076 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC16.59■□□□□ 0.25
CIITAP33076 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CIITAP33076 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.59■□□□□ 0.25
CIITAP33076 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC16.59■□□□□ 0.25
CIITAP33076 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC16.59■□□□□ 0.25
CIITAP33076 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC16.59■□□□□ 0.25
CIITAP33076 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CIITAP33076 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC16.59■□□□□ 0.25
CIITAP33076 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CIITAP33076 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC16.59■□□□□ 0.25
CIITAP33076 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CIITAP33076 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC16.59■□□□□ 0.25
CIITAP33076 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CIITAP33076 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
CIITAP33076 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC16.59■□□□□ 0.25
CIITAP33076 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CIITAP33076 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CIITAP33076 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CIITAP33076 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
CIITAP33076 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
CIITAP33076 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CIITAP33076 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CIITAP33076 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC16.58■□□□□ 0.25
CIITAP33076 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CIITAP33076 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.25
CIITAP33076 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CIITAP33076 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CIITAP33076 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
CIITAP33076 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC16.58■□□□□ 0.25
CIITAP33076 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
CIITAP33076 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.58■□□□□ 0.25
CIITAP33076 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CIITAP33076 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CIITAP33076 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CIITAP33076 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CIITAP33076 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.58■□□□□ 0.25
CIITAP33076 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC16.58■□□□□ 0.24
CIITAP33076 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CIITAP33076 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CIITAP33076 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CIITAP33076 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CIITAP33076 AC005740.2-201ENST00000511085 419 ntBASIC16.58■□□□□ 0.24
CIITAP33076 IGHVIII-5-2-201ENST00000522505 261 ntBASIC16.58■□□□□ 0.24
CIITAP33076 FADS2-212ENST00000522639 360 ntTSL 5 BASIC16.58■□□□□ 0.24
CIITAP33076 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC16.58■□□□□ 0.24
CIITAP33076 AC013355.1-201ENST00000562625 723 ntBASIC16.58■□□□□ 0.24
CIITAP33076 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CIITAP33076 FADS2-215ENST00000574708 385 ntTSL 3 BASIC16.58■□□□□ 0.24
CIITAP33076 MIR3615-201ENST00000581999 87 ntBASIC16.58■□□□□ 0.24
CIITAP33076 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms