Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A5P29400 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
COL4A5P29400 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
COL4A5P29400 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC17.21■□□□□ 0.35
COL4A5P29400 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC17.21■□□□□ 0.35
COL4A5P29400 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A5P29400 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A5P29400 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A5P29400 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A5P29400 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A5P29400 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A5P29400 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A5P29400 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A5P29400 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A5P29400 SARS-202ENST00000369923 1882 ntTSL 5 BASIC17.21■□□□□ 0.35
COL4A5P29400 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC17.21■□□□□ 0.35
COL4A5P29400 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC17.21■□□□□ 0.35
COL4A5P29400 AF274858.1-201ENST00000406288 372 ntBASIC17.21■□□□□ 0.35
COL4A5P29400 AC092570.1-201ENST00000414446 469 ntBASIC17.21■□□□□ 0.35
COL4A5P29400 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC17.21■□□□□ 0.35
COL4A5P29400 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A5P29400 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC17.21■□□□□ 0.35
COL4A5P29400 AC087203.1-201ENST00000532111 1181 ntBASIC17.21■□□□□ 0.35
COL4A5P29400 SORD2P-201ENST00000558556 1069 ntBASIC17.21■□□□□ 0.35
COL4A5P29400 AC138761.6-201ENST00000583997 1423 ntBASIC17.21■□□□□ 0.35
COL4A5P29400 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC17.21■□□□□ 0.35
COL4A5P29400 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A5P29400 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A5P29400 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.21■□□□□ 0.35
COL4A5P29400 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A5P29400 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC17.21■□□□□ 0.35
COL4A5P29400 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A5P29400 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A5P29400 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A5P29400 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A5P29400 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A5P29400 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC17.21■□□□□ 0.35
COL4A5P29400 LINC00554-201ENST00000564841 3011 ntBASIC17.21■□□□□ 0.35
COL4A5P29400 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
COL4A5P29400 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
COL4A5P29400 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
COL4A5P29400 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
COL4A5P29400 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
COL4A5P29400 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
COL4A5P29400 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
COL4A5P29400 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
COL4A5P29400 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A5P29400 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A5P29400 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC17.2■□□□□ 0.34
COL4A5P29400 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A5P29400 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
COL4A5P29400 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC17.2■□□□□ 0.34
COL4A5P29400 RPS18P9-201ENST00000482817 460 ntBASIC17.2■□□□□ 0.34
COL4A5P29400 PRSS3P1-201ENST00000503996 742 ntBASIC17.2■□□□□ 0.34
COL4A5P29400 AL590235.1-201ENST00000564650 861 ntBASIC17.2■□□□□ 0.34
COL4A5P29400 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC17.2■□□□□ 0.34
COL4A5P29400 AL136982.5-201ENST00000605222 294 ntBASIC17.2■□□□□ 0.34
COL4A5P29400 AL009176.1-201ENST00000607876 650 ntBASIC17.2■□□□□ 0.34
COL4A5P29400 PTPN20CP-201ENST00000614090 920 ntBASIC17.2■□□□□ 0.34
COL4A5P29400 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A5P29400 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.2■□□□□ 0.34
COL4A5P29400 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC17.2■□□□□ 0.34
COL4A5P29400 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A5P29400 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
COL4A5P29400 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.2■□□□□ 0.34
COL4A5P29400 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A5P29400 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
COL4A5P29400 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A5P29400 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC17.2■□□□□ 0.34
COL4A5P29400 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A5P29400 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A5P29400 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A5P29400 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A5P29400 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A5P29400 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC17.2■□□□□ 0.34
COL4A5P29400 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A5P29400 KRT18P4-201ENST00000422599 1288 ntBASIC17.2■□□□□ 0.34
COL4A5P29400 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
COL4A5P29400 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
COL4A5P29400 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC17.2■□□□□ 0.34
COL4A5P29400 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC17.2■□□□□ 0.34
COL4A5P29400 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC17.2■□□□□ 0.34
COL4A5P29400 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC17.2■□□□□ 0.34
COL4A5P29400 RN7SKP155-201ENST00000516031 288 ntBASIC17.2■□□□□ 0.34
COL4A5P29400 CASP3-205ENST00000517513 964 ntTSL 5 BASIC17.2■□□□□ 0.34
COL4A5P29400 IGHEP1-201ENST00000521393 651 ntBASIC17.2■□□□□ 0.34
COL4A5P29400 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A5P29400 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A5P29400 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC17.2■□□□□ 0.34
COL4A5P29400 AC005586.2-201ENST00000563946 837 ntBASIC17.2■□□□□ 0.34
COL4A5P29400 MIR4265-201ENST00000582152 99 ntBASIC17.2■□□□□ 0.34
COL4A5P29400 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
COL4A5P29400 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
COL4A5P29400 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A5P29400 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A5P29400 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A5P29400 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A5P29400 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A5P29400 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A5P29400 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms