Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A3P25940 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC18.01■□□□□ 0.47
COL5A3P25940 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
COL5A3P25940 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC18.01■□□□□ 0.47
COL5A3P25940 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A3P25940 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC18.01■□□□□ 0.47
COL5A3P25940 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC18.01■□□□□ 0.47
COL5A3P25940 DUT-208ENST00000559540 1441 ntTSL 2 BASIC18.01■□□□□ 0.47
COL5A3P25940 AC138761.6-201ENST00000583997 1423 ntBASIC18.01■□□□□ 0.47
COL5A3P25940 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC18.01■□□□□ 0.47
COL5A3P25940 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A3P25940 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
COL5A3P25940 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A3P25940 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC18.01■□□□□ 0.47
COL5A3P25940 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A3P25940 UROS-201ENST00000368774 744 ntTSL 2 BASIC18.01■□□□□ 0.47
COL5A3P25940 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC18.01■□□□□ 0.47
COL5A3P25940 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC18.01■□□□□ 0.47
COL5A3P25940 HLA-DPA2-205ENST00000433582 733 ntBASIC18.01■□□□□ 0.47
COL5A3P25940 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC18.01■□□□□ 0.47
COL5A3P25940 EEF1GP8-201ENST00000506566 1154 ntBASIC18.01■□□□□ 0.47
COL5A3P25940 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC18.01■□□□□ 0.47
COL5A3P25940 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC18.01■□□□□ 0.47
COL5A3P25940 AC018695.6-201ENST00000614011 534 ntBASIC18.01■□□□□ 0.47
COL5A3P25940 AC026336.4-201ENST00000624565 1050 ntBASIC18.01■□□□□ 0.47
COL5A3P25940 FKBP4P8-201ENST00000610931 1369 ntBASIC18■□□□□ 0.47
COL5A3P25940 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
COL5A3P25940 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC18■□□□□ 0.47
COL5A3P25940 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
COL5A3P25940 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL5A3P25940 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL5A3P25940 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL5A3P25940 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL5A3P25940 MECR-202ENST00000373791 2416 ntTSL 2 BASIC18■□□□□ 0.47
COL5A3P25940 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC18■□□□□ 0.47
COL5A3P25940 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL5A3P25940 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL5A3P25940 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
COL5A3P25940 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL5A3P25940 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL5A3P25940 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
COL5A3P25940 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC18■□□□□ 0.47
COL5A3P25940 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL5A3P25940 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL5A3P25940 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC18■□□□□ 0.47
COL5A3P25940 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
COL5A3P25940 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC18■□□□□ 0.47
COL5A3P25940 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC18■□□□□ 0.47
COL5A3P25940 MBP-238ENST00000580402 915 ntTSL 5 BASIC18■□□□□ 0.47
COL5A3P25940 DGAT2L7P-201ENST00000602462 744 ntBASIC18■□□□□ 0.47
COL5A3P25940 AL009176.1-201ENST00000607876 650 ntBASIC18■□□□□ 0.47
COL5A3P25940 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC18■□□□□ 0.47
COL5A3P25940 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC18■□□□□ 0.47
COL5A3P25940 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
COL5A3P25940 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL5A3P25940 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
COL5A3P25940 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL5A3P25940 USP39-220ENST00000613444 2161 ntTSL 2 BASIC17.99■□□□□ 0.47
COL5A3P25940 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL5A3P25940 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL5A3P25940 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.99■□□□□ 0.47
COL5A3P25940 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
COL5A3P25940 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC17.99■□□□□ 0.47
COL5A3P25940 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL5A3P25940 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL5A3P25940 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL5A3P25940 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL5A3P25940 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
COL5A3P25940 OR51A9P-201ENST00000422578 911 ntBASIC17.99■□□□□ 0.47
COL5A3P25940 KRT18P62-201ENST00000446618 1287 ntBASIC17.99■□□□□ 0.47
COL5A3P25940 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC17.99■□□□□ 0.47
COL5A3P25940 AC093300.1-201ENST00000510368 1201 ntBASIC17.99■□□□□ 0.47
COL5A3P25940 MIR4265-201ENST00000582152 99 ntBASIC17.99■□□□□ 0.47
COL5A3P25940 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC17.99■□□□□ 0.47
COL5A3P25940 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC17.99■□□□□ 0.47
COL5A3P25940 CICP6-201ENST00000457191 2729 ntBASIC17.99■□□□□ 0.47
COL5A3P25940 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL5A3P25940 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC17.99■□□□□ 0.47
COL5A3P25940 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL5A3P25940 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC17.99■□□□□ 0.47
COL5A3P25940 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL5A3P25940 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL5A3P25940 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL5A3P25940 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.99■□□□□ 0.47
COL5A3P25940 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL5A3P25940 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC17.99■□□□□ 0.47
COL5A3P25940 AC008894.3-201ENST00000624324 3103 ntBASIC17.99■□□□□ 0.47
COL5A3P25940 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
COL5A3P25940 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A3P25940 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
COL5A3P25940 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A3P25940 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.98■□□□□ 0.47
COL5A3P25940 OR10N1P-201ENST00000392758 869 ntBASIC17.98■□□□□ 0.47
COL5A3P25940 ABCD1P4-201ENST00000399687 604 ntBASIC17.98■□□□□ 0.47
COL5A3P25940 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A3P25940 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC17.98■□□□□ 0.47
COL5A3P25940 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC17.98■□□□□ 0.47
COL5A3P25940 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
COL5A3P25940 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC17.98■□□□□ 0.47
COL5A3P25940 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms