Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB1P09429 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB1P09429 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC17.47■□□□□ 0.39
HMGB1P09429 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC17.47■□□□□ 0.39
HMGB1P09429 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
HMGB1P09429 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB1P09429 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC17.47■□□□□ 0.39
HMGB1P09429 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGB1P09429 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB1P09429 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC17.47■□□□□ 0.39
HMGB1P09429 AC073413.1-201ENST00000603927 732 ntBASIC17.47■□□□□ 0.39
HMGB1P09429 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
HMGB1P09429 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
HMGB1P09429 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
HMGB1P09429 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
HMGB1P09429 RN7SL832P-201ENST00000607781 1756 ntBASIC17.47■□□□□ 0.39
HMGB1P09429 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
HMGB1P09429 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC17.47■□□□□ 0.39
HMGB1P09429 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB1P09429 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC17.47■□□□□ 0.39
HMGB1P09429 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGB1P09429 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
HMGB1P09429 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB1P09429 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
HMGB1P09429 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB1P09429 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB1P09429 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB1P09429 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB1P09429 AHCYP2-201ENST00000430630 1300 ntBASIC17.47■□□□□ 0.39
HMGB1P09429 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB1P09429 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC17.46■□□□□ 0.39
HMGB1P09429 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB1P09429 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC17.46■□□□□ 0.39
HMGB1P09429 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB1P09429 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
HMGB1P09429 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB1P09429 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB1P09429 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB1P09429 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
HMGB1P09429 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB1P09429 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC17.46■□□□□ 0.39
HMGB1P09429 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC17.46■□□□□ 0.39
HMGB1P09429 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB1P09429 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB1P09429 RPL7P3-201ENST00000441388 714 ntBASIC17.46■□□□□ 0.39
HMGB1P09429 GAPDHP21-201ENST00000450301 1010 ntBASIC17.46■□□□□ 0.39
HMGB1P09429 AL035414.1-201ENST00000451327 857 ntBASIC17.46■□□□□ 0.39
HMGB1P09429 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC17.46■□□□□ 0.39
HMGB1P09429 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC17.46■□□□□ 0.39
HMGB1P09429 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC17.46■□□□□ 0.39
HMGB1P09429 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
HMGB1P09429 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC17.46■□□□□ 0.39
HMGB1P09429 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
HMGB1P09429 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC17.46■□□□□ 0.39
HMGB1P09429 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC17.46■□□□□ 0.39
HMGB1P09429 ORC6-206ENST00000568364 888 ntTSL 5 BASIC17.46■□□□□ 0.39
HMGB1P09429 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC17.46■□□□□ 0.39
HMGB1P09429 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC17.46■□□□□ 0.39
HMGB1P09429 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC17.46■□□□□ 0.39
HMGB1P09429 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB1P09429 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC17.46■□□□□ 0.39
HMGB1P09429 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC17.46■□□□□ 0.39
HMGB1P09429 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC17.46■□□□□ 0.39
HMGB1P09429 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB1P09429 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB1P09429 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB1P09429 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB1P09429 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB1P09429 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB1P09429 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB1P09429 OS9-204ENST00000389146 2091 ntTSL 2 BASIC17.46■□□□□ 0.39
HMGB1P09429 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB1P09429 AC006504.5-208ENST00000588784 2401 ntBASIC17.46■□□□□ 0.38
HMGB1P09429 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
HMGB1P09429 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
HMGB1P09429 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC17.45■□□□□ 0.38
HMGB1P09429 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC17.45■□□□□ 0.38
HMGB1P09429 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
HMGB1P09429 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
HMGB1P09429 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC17.45■□□□□ 0.38
HMGB1P09429 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC17.45■□□□□ 0.38
HMGB1P09429 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
HMGB1P09429 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
HMGB1P09429 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 HIST1H2BPS3-201ENST00000419683 341 ntBASIC17.45■□□□□ 0.38
HMGB1P09429 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC17.45■□□□□ 0.38
HMGB1P09429 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC17.45■□□□□ 0.38
HMGB1P09429 AC079316.1-201ENST00000548397 411 ntBASIC17.45■□□□□ 0.38
HMGB1P09429 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms