Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.64□□□□□ -0.07
PDGFBP01127 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
PDGFBP01127 FUCA1P1-201ENST00000374476 1351 ntBASIC14.64□□□□□ -0.07
PDGFBP01127 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
PDGFBP01127 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
PDGFBP01127 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
PDGFBP01127 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.64□□□□□ -0.07
PDGFBP01127 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
PDGFBP01127 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC14.64□□□□□ -0.07
PDGFBP01127 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC14.64□□□□□ -0.07
PDGFBP01127 SAT1-201ENST00000379251 801 ntTSL 2 BASIC14.64□□□□□ -0.07
PDGFBP01127 SAT1-202ENST00000379253 909 ntTSL 2 BASIC14.64□□□□□ -0.07
PDGFBP01127 SAT1-203ENST00000379254 868 ntTSL 3 BASIC14.64□□□□□ -0.07
PDGFBP01127 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
PDGFBP01127 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC14.64□□□□□ -0.07
PDGFBP01127 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC14.64□□□□□ -0.07
PDGFBP01127 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC14.64□□□□□ -0.07
PDGFBP01127 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC14.64□□□□□ -0.07
PDGFBP01127 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC14.64□□□□□ -0.07
PDGFBP01127 SCARNA12-201ENST00000459155 270 ntBASIC14.64□□□□□ -0.07
PDGFBP01127 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC14.64□□□□□ -0.07
PDGFBP01127 BCL2L12P1-201ENST00000508390 733 ntBASIC14.64□□□□□ -0.07
PDGFBP01127 HINT1-205ENST00000508488 703 ntTSL 2 BASIC14.64□□□□□ -0.07
PDGFBP01127 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.64□□□□□ -0.07
PDGFBP01127 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC14.64□□□□□ -0.07
PDGFBP01127 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC14.64□□□□□ -0.07
PDGFBP01127 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC14.64□□□□□ -0.07
PDGFBP01127 AL603832.2-201ENST00000566195 2125 ntBASIC14.64□□□□□ -0.07
PDGFBP01127 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
PDGFBP01127 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC14.64□□□□□ -0.07
PDGFBP01127 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC14.64□□□□□ -0.07
PDGFBP01127 AL160191.2-201ENST00000603975 601 ntBASIC14.64□□□□□ -0.07
PDGFBP01127 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC14.64□□□□□ -0.07
PDGFBP01127 AC110057.1-201ENST00000636031 898 ntBASIC14.64□□□□□ -0.07
PDGFBP01127 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
PDGFBP01127 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.64□□□□□ -0.07
PDGFBP01127 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.64□□□□□ -0.07
PDGFBP01127 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
PDGFBP01127 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC14.64□□□□□ -0.07
PDGFBP01127 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC14.64□□□□□ -0.07
PDGFBP01127 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.64□□□□□ -0.07
PDGFBP01127 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC14.64□□□□□ -0.07
PDGFBP01127 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.64□□□□□ -0.07
PDGFBP01127 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDGFBP01127 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.63□□□□□ -0.07
PDGFBP01127 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC14.63□□□□□ -0.07
PDGFBP01127 AP000845.1-201ENST00000581677 2131 ntBASIC14.63□□□□□ -0.07
PDGFBP01127 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.63□□□□□ -0.07
PDGFBP01127 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PDGFBP01127 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PDGFBP01127 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
PDGFBP01127 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PDGFBP01127 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
PDGFBP01127 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PDGFBP01127 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC14.63□□□□□ -0.07
PDGFBP01127 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.63□□□□□ -0.07
PDGFBP01127 JTB-202ENST00000356648 1040 ntTSL 2 BASIC14.63□□□□□ -0.07
PDGFBP01127 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PDGFBP01127 RNVU1-8-201ENST00000364272 125 ntBASIC14.63□□□□□ -0.07
PDGFBP01127 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PDGFBP01127 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
PDGFBP01127 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
PDGFBP01127 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PDGFBP01127 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
PDGFBP01127 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC14.63□□□□□ -0.07
PDGFBP01127 OR2A1-AS1-210ENST00000496968 531 ntBASIC14.63□□□□□ -0.07
PDGFBP01127 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC14.63□□□□□ -0.07
PDGFBP01127 RPS23-207ENST00000511844 530 ntTSL 2 BASIC14.63□□□□□ -0.07
PDGFBP01127 IGHEP2-201ENST00000519308 1256 ntBASIC14.63□□□□□ -0.07
PDGFBP01127 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC14.63□□□□□ -0.07
PDGFBP01127 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC14.63□□□□□ -0.07
PDGFBP01127 AC011462.4-201ENST00000616866 449 ntBASIC14.63□□□□□ -0.07
PDGFBP01127 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
PDGFBP01127 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PDGFBP01127 BRD7P5-201ENST00000299197 1822 ntBASIC14.63□□□□□ -0.07
PDGFBP01127 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PDGFBP01127 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
PDGFBP01127 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms