Protein–RNA interactions for Protein: Q8NHV4

NEDD1, Protein NEDD1, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1Q8NHV4 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 RER1-203ENST00000378513 3000 ntTSL 3 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 MYB-201ENST00000316528 3571 ntTSL 5 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 MYB-241ENST00000616088 3573 ntTSL 5 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 RAN-210ENST00000541630 1475 ntTSL 2 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 AC092299.1-201ENST00000632679 757 ntBASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 NAP1L6-202ENST00000641404 1222 ntBASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC17.13■□□□□ 0.33
NEDD1Q8NHV4 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 Z97180.1-201ENST00000445173 988 ntBASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 RN7SL574P-201ENST00000581512 297 ntBASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 AC097724.1-201ENST00000609581 426 ntBASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 AHCYP4-201ENST00000419201 1315 ntBASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 AC215219.1-201ENST00000400706 1817 ntBASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 KRT8P21-201ENST00000430398 1491 ntBASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
NEDD1Q8NHV4 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEDD1Q8NHV4 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC17.11■□□□□ 0.33
NEDD1Q8NHV4 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEDD1Q8NHV4 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEDD1Q8NHV4 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEDD1Q8NHV4 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NEDD1Q8NHV4 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NEDD1Q8NHV4 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NEDD1Q8NHV4 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEDD1Q8NHV4 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms