Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDDC3Q8N4P3 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDDC3Q8N4P3 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.88□□□□□ -0.03
HDDC3Q8N4P3 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDDC3Q8N4P3 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDDC3Q8N4P3 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDDC3Q8N4P3 AL008718.2-201ENST00000609206 1313 ntBASIC14.88□□□□□ -0.03
HDDC3Q8N4P3 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
HDDC3Q8N4P3 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDDC3Q8N4P3 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HDDC3Q8N4P3 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.88□□□□□ -0.03
HDDC3Q8N4P3 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.88□□□□□ -0.03
HDDC3Q8N4P3 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
HDDC3Q8N4P3 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDDC3Q8N4P3 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.88□□□□□ -0.03
HDDC3Q8N4P3 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDDC3Q8N4P3 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HDDC3Q8N4P3 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HDDC3Q8N4P3 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDDC3Q8N4P3 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDDC3Q8N4P3 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 ACTG1P2-201ENST00000415776 1125 ntBASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 ACTG1P11-201ENST00000425411 1125 ntBASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 AC069218.1-201ENST00000435269 762 ntBASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 ALG3P1-201ENST00000508806 1114 ntBASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 AC131206.1-201ENST00000538078 1211 ntBASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.87□□□□□ -0.03
HDDC3Q8N4P3 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 AL109954.1-202ENST00000564051 2148 ntBASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 SLC16A6P1-201ENST00000413214 1059 ntBASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 PUDPP3-201ENST00000445368 636 ntBASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 AL353637.1-201ENST00000451571 732 ntBASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 CICP12-201ENST00000455801 843 ntBASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 MARK2P5-201ENST00000507649 634 ntBASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 GCOM2-201ENST00000509133 1104 ntBASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 AC009884.2-201ENST00000603110 324 ntBASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 AL157791.1-201ENST00000553667 1699 ntBASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HDDC3Q8N4P3 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms