Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 CENPM-206ENST00000407253 818 ntTSL 2 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 SSH2-210ENST00000582084 560 ntTSL 3 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 YTHDF3-AS1-201ENST00000603538 718 ntBASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 AL133215.2-201ENST00000609242 977 ntBASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 CBR3-AS1-213ENST00000623647 815 ntTSL 5 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
DEPDC4Q8N2C3 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
DEPDC4Q8N2C3 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
DEPDC4Q8N2C3 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.18
DEPDC4Q8N2C3 AC131212.3-201ENST00000624087 4219 ntBASIC13.96□□□□□ -0.18
DEPDC4Q8N2C3 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
DEPDC4Q8N2C3 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
DEPDC4Q8N2C3 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
DEPDC4Q8N2C3 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
DEPDC4Q8N2C3 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC13.96□□□□□ -0.18
DEPDC4Q8N2C3 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
DEPDC4Q8N2C3 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 AC027612.1-201ENST00000445234 2395 ntBASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 BTBD7P1-201ENST00000447253 1453 ntBASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 STOM-203ENST00000538954 1257 ntTSL 5 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 PRR29-204ENST00000577953 565 ntTSL 4 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 AL358472.5-202ENST00000641448 1267 ntBASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 APP-205ENST00000358918 2366 ntTSL 5 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 KRT8P12-202ENST00000472924 1397 ntBASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
DEPDC4Q8N2C3 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 GALC-206ENST00000544807 2528 ntTSL 2 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms