Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC17.24■□□□□ 0.35
COL4A5P29400 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A5P29400 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
COL4A5P29400 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC17.24■□□□□ 0.35
COL4A5P29400 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A5P29400 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.23■□□□□ 0.35
COL4A5P29400 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
COL4A5P29400 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
COL4A5P29400 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
COL4A5P29400 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A5P29400 BX679664.3-201ENST00000414070 555 ntBASIC17.23■□□□□ 0.35
COL4A5P29400 AC092573.1-201ENST00000433054 884 ntBASIC17.23■□□□□ 0.35
COL4A5P29400 RPL3P5-201ENST00000441645 1232 ntBASIC17.23■□□□□ 0.35
COL4A5P29400 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC17.23■□□□□ 0.35
COL4A5P29400 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A5P29400 AC092896.1-201ENST00000465850 380 ntBASIC17.23■□□□□ 0.35
COL4A5P29400 AC113935.1-201ENST00000471722 555 ntBASIC17.23■□□□□ 0.35
COL4A5P29400 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A5P29400 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC17.23■□□□□ 0.35
COL4A5P29400 RN7SL147P-201ENST00000487345 298 ntBASIC17.23■□□□□ 0.35
COL4A5P29400 RN7SL288P-201ENST00000490496 291 ntBASIC17.23■□□□□ 0.35
COL4A5P29400 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC17.23■□□□□ 0.35
COL4A5P29400 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC17.23■□□□□ 0.35
COL4A5P29400 RN7SL455P-201ENST00000580629 282 ntBASIC17.23■□□□□ 0.35
COL4A5P29400 FTLP5-201ENST00000586853 534 ntBASIC17.23■□□□□ 0.35
COL4A5P29400 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC17.23■□□□□ 0.35
COL4A5P29400 MIR6816-201ENST00000620368 66 ntBASIC17.23■□□□□ 0.35
COL4A5P29400 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC17.23■□□□□ 0.35
COL4A5P29400 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A5P29400 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A5P29400 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
COL4A5P29400 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC17.23■□□□□ 0.35
COL4A5P29400 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A5P29400 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A5P29400 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A5P29400 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A5P29400 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A5P29400 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
COL4A5P29400 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC17.23■□□□□ 0.35
COL4A5P29400 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
COL4A5P29400 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC17.23■□□□□ 0.35
COL4A5P29400 AC138035.3-201ENST00000622706 2791 ntBASIC17.23■□□□□ 0.35
COL4A5P29400 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC17.23■□□□□ 0.35
COL4A5P29400 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
COL4A5P29400 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
COL4A5P29400 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A5P29400 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A5P29400 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A5P29400 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A5P29400 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC17.23■□□□□ 0.35
COL4A5P29400 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A5P29400 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC17.23■□□□□ 0.35
COL4A5P29400 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC17.23■□□□□ 0.35
COL4A5P29400 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC17.23■□□□□ 0.35
COL4A5P29400 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A5P29400 AC008026.2-201ENST00000495438 348 ntBASIC17.23■□□□□ 0.35
COL4A5P29400 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
COL4A5P29400 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC17.23■□□□□ 0.35
COL4A5P29400 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC17.23■□□□□ 0.35
COL4A5P29400 AC026336.4-201ENST00000624565 1050 ntBASIC17.23■□□□□ 0.35
COL4A5P29400 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC17.23■□□□□ 0.35
COL4A5P29400 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A5P29400 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A5P29400 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A5P29400 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.22■□□□□ 0.35
COL4A5P29400 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
COL4A5P29400 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A5P29400 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A5P29400 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A5P29400 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A5P29400 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A5P29400 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.22■□□□□ 0.35
COL4A5P29400 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC17.22■□□□□ 0.35
COL4A5P29400 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A5P29400 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A5P29400 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A5P29400 AC006987.1-201ENST00000413610 527 ntBASIC17.22■□□□□ 0.35
COL4A5P29400 PGAM1P11-201ENST00000416729 680 ntBASIC17.22■□□□□ 0.35
COL4A5P29400 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC17.22■□□□□ 0.35
COL4A5P29400 AL451000.1-201ENST00000451300 1186 ntBASIC17.22■□□□□ 0.35
COL4A5P29400 ALG1L7P-201ENST00000502317 768 ntBASIC17.22■□□□□ 0.35
COL4A5P29400 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC17.22■□□□□ 0.35
COL4A5P29400 SEPHS2P1-201ENST00000511618 1162 ntBASIC17.22■□□□□ 0.35
COL4A5P29400 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC17.22■□□□□ 0.35
COL4A5P29400 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC17.22■□□□□ 0.35
COL4A5P29400 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC17.22■□□□□ 0.35
COL4A5P29400 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC17.22■□□□□ 0.35
COL4A5P29400 DLK1-205ENST00000556051 469 ntTSL 2 BASIC17.22■□□□□ 0.35
COL4A5P29400 AC068831.5-201ENST00000557387 328 ntBASIC17.22■□□□□ 0.35
COL4A5P29400 CMC2-204ENST00000562713 573 ntTSL 3 BASIC17.22■□□□□ 0.35
COL4A5P29400 CMC2-209ENST00000565108 399 ntTSL 2 BASIC17.22■□□□□ 0.35
COL4A5P29400 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC17.22■□□□□ 0.35
COL4A5P29400 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC17.22■□□□□ 0.35
COL4A5P29400 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC17.22■□□□□ 0.35
COL4A5P29400 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A5P29400 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
COL4A5P29400 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC17.22■□□□□ 0.35
COL4A5P29400 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC17.22■□□□□ 0.35
COL4A5P29400 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A5P29400 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms