Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC16.46■□□□□ 0.22
TPM1P09493 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC16.45■□□□□ 0.22
TPM1P09493 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC16.45■□□□□ 0.22
TPM1P09493 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC16.45■□□□□ 0.22
TPM1P09493 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.45■□□□□ 0.22
TPM1P09493 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
TPM1P09493 TP73-201ENST00000346387 4854 ntTSL 5 BASIC16.45■□□□□ 0.22
TPM1P09493 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
TPM1P09493 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC16.45■□□□□ 0.22
TPM1P09493 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC16.45■□□□□ 0.22
TPM1P09493 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC16.45■□□□□ 0.22
TPM1P09493 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
TPM1P09493 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 AL645937.2-201ENST00000396808 931 ntBASIC16.45■□□□□ 0.22
TPM1P09493 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.45■□□□□ 0.22
TPM1P09493 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.45■□□□□ 0.22
TPM1P09493 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC16.45■□□□□ 0.22
TPM1P09493 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.45■□□□□ 0.22
TPM1P09493 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC16.45■□□□□ 0.22
TPM1P09493 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.45■□□□□ 0.22
TPM1P09493 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC16.45■□□□□ 0.22
TPM1P09493 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.45■□□□□ 0.22
TPM1P09493 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.45■□□□□ 0.22
TPM1P09493 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
TPM1P09493 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC16.45■□□□□ 0.22
TPM1P09493 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
TPM1P09493 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
TPM1P09493 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC16.45■□□□□ 0.22
TPM1P09493 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC16.45■□□□□ 0.22
TPM1P09493 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC16.45■□□□□ 0.22
TPM1P09493 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
TPM1P09493 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
TPM1P09493 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
TPM1P09493 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC16.44■□□□□ 0.22
TPM1P09493 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
TPM1P09493 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC16.44■□□□□ 0.22
TPM1P09493 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.44■□□□□ 0.22
TPM1P09493 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.44■□□□□ 0.22
TPM1P09493 AC069262.1-201ENST00000539058 672 ntBASIC16.44■□□□□ 0.22
TPM1P09493 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC16.44■□□□□ 0.22
TPM1P09493 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.44■□□□□ 0.22
TPM1P09493 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.44■□□□□ 0.22
TPM1P09493 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 SPDYE12P-201ENST00000618416 771 ntBASIC16.44■□□□□ 0.22
TPM1P09493 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC16.44■□□□□ 0.22
TPM1P09493 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.44■□□□□ 0.22
TPM1P09493 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.44■□□□□ 0.22
TPM1P09493 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
TPM1P09493 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
TPM1P09493 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TPM1P09493 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC16.43■□□□□ 0.22
TPM1P09493 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TPM1P09493 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
TPM1P09493 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TPM1P09493 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TPM1P09493 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TPM1P09493 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TPM1P09493 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TPM1P09493 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms