Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 USP17L7-201ENST00000530447 2022 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
SHOX2O60902 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.87□□□□□ -0.03
SHOX2O60902 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
SHOX2O60902 RC3H2-201ENST00000335387 3081 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC14.86□□□□□ -0.03
SHOX2O60902 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
SHOX2O60902 GHET1-201ENST00000627071 1906 ntBASIC14.86□□□□□ -0.03
SHOX2O60902 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
SHOX2O60902 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 AL390066.1-201ENST00000456414 2302 ntTSL 2 BASIC14.86□□□□□ -0.03
SHOX2O60902 C2-209ENST00000452323 1999 ntTSL 2 BASIC14.86□□□□□ -0.03
SHOX2O60902 TFIP11-201ENST00000405938 2896 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
SHOX2O60902 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC14.86□□□□□ -0.03
SHOX2O60902 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
SHOX2O60902 HLA-K-203ENST00000430151 1046 ntBASIC14.86□□□□□ -0.03
SHOX2O60902 AC007967.2-201ENST00000432613 625 ntBASIC14.86□□□□□ -0.03
SHOX2O60902 KRT18P64-201ENST00000434946 1219 ntBASIC14.86□□□□□ -0.03
SHOX2O60902 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 KRT18P2-201ENST00000447938 1258 ntBASIC14.86□□□□□ -0.03
SHOX2O60902 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC14.86□□□□□ -0.03
SHOX2O60902 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC14.86□□□□□ -0.03
SHOX2O60902 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC14.86□□□□□ -0.03
SHOX2O60902 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.86□□□□□ -0.03
SHOX2O60902 AC034105.1-201ENST00000563488 319 ntBASIC14.86□□□□□ -0.03
SHOX2O60902 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
SHOX2O60902 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
SHOX2O60902 AC027307.2-201ENST00000591252 911 ntBASIC14.86□□□□□ -0.03
SHOX2O60902 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.86□□□□□ -0.03
SHOX2O60902 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC14.86□□□□□ -0.03
SHOX2O60902 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC14.86□□□□□ -0.03
SHOX2O60902 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC14.86□□□□□ -0.03
SHOX2O60902 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 FAM90A11P-201ENST00000518378 2218 ntBASIC14.86□□□□□ -0.03
SHOX2O60902 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
SHOX2O60902 TMBIM1-202ENST00000396809 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 LINC01019-201ENST00000505443 3199 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 MAGED4-201ENST00000375626 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 SNX25-201ENST00000264694 3264 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
SHOX2O60902 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.86□□□□□ -0.03
SHOX2O60902 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 KIF3A-208ENST00000618515 3333 ntTSL 5 BASIC14.86□□□□□ -0.03
SHOX2O60902 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHOX2O60902 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.85□□□□□ -0.03
SHOX2O60902 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.85□□□□□ -0.03
SHOX2O60902 TMPRSS13-202ENST00000445164 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHOX2O60902 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHOX2O60902 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHOX2O60902 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
SHOX2O60902 BCAM-211ENST00000611077 3430 ntTSL 5 BASIC14.85□□□□□ -0.03
SHOX2O60902 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
SHOX2O60902 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHOX2O60902 BTNL8-201ENST00000231229 2229 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHOX2O60902 TRPC7-201ENST00000352189 2241 ntTSL 5 BASIC14.85□□□□□ -0.03
SHOX2O60902 RRBP1-206ENST00000455029 2485 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHOX2O60902 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHOX2O60902 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHOX2O60902 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.85□□□□□ -0.03
SHOX2O60902 PRKAB1-205ENST00000540121 1673 ntTSL 5 BASIC14.85□□□□□ -0.03
SHOX2O60902 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.85□□□□□ -0.03
SHOX2O60902 ALKBH5-201ENST00000399138 2748 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
SHOX2O60902 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHOX2O60902 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHOX2O60902 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC14.85□□□□□ -0.03
SHOX2O60902 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
SHOX2O60902 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC14.85□□□□□ -0.03
SHOX2O60902 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC14.85□□□□□ -0.03
SHOX2O60902 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC14.85□□□□□ -0.03
SHOX2O60902 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHOX2O60902 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHOX2O60902 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
SHOX2O60902 KRT19P2-202ENST00000557173 1012 ntBASIC14.85□□□□□ -0.03
SHOX2O60902 Z83851.2-201ENST00000609564 659 ntBASIC14.85□□□□□ -0.03
SHOX2O60902 AC134407.3-201ENST00000624035 2139 ntBASIC14.85□□□□□ -0.03
SHOX2O60902 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHOX2O60902 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC14.85□□□□□ -0.03
SHOX2O60902 ZSWIM3-201ENST00000255152 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHOX2O60902 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHOX2O60902 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC14.85□□□□□ -0.03
SHOX2O60902 TRGV9-201ENST00000444775 1735 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
SHOX2O60902 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.85□□□□□ -0.03
SHOX2O60902 PTPN6-202ENST00000399448 2159 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHOX2O60902 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC14.85□□□□□ -0.03
SHOX2O60902 PCDHA6-201ENST00000378126 3267 ntBASIC14.85□□□□□ -0.03
SHOX2O60902 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 148.7 ms