Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC15.47■□□□□ 0.07
CCDC188H7C350 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC188H7C350 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC188H7C350 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC15.46■□□□□ 0.07
CCDC188H7C350 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
CCDC188H7C350 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
CCDC188H7C350 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC15.46■□□□□ 0.07
CCDC188H7C350 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC15.46■□□□□ 0.07
CCDC188H7C350 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC188H7C350 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
CCDC188H7C350 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC15.46■□□□□ 0.07
CCDC188H7C350 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC188H7C350 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC188H7C350 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC188H7C350 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.46■□□□□ 0.07
CCDC188H7C350 AC211486.1-202ENST00000416371 468 ntBASIC15.46■□□□□ 0.07
CCDC188H7C350 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
CCDC188H7C350 RPL13AP25-201ENST00000484130 612 ntBASIC15.46■□□□□ 0.07
CCDC188H7C350 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC188H7C350 AC211476.1-201ENST00000503899 468 ntBASIC15.46■□□□□ 0.07
CCDC188H7C350 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC15.46■□□□□ 0.07
CCDC188H7C350 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.46■□□□□ 0.07
CCDC188H7C350 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC15.46■□□□□ 0.07
CCDC188H7C350 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.46■□□□□ 0.07
CCDC188H7C350 AL121894.2-201ENST00000602977 491 ntBASIC15.46■□□□□ 0.07
CCDC188H7C350 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC188H7C350 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC188H7C350 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC15.46■□□□□ 0.07
CCDC188H7C350 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC15.46■□□□□ 0.07
CCDC188H7C350 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
CCDC188H7C350 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
CCDC188H7C350 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC188H7C350 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC15.46■□□□□ 0.07
CCDC188H7C350 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC188H7C350 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC188H7C350 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC188H7C350 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
CCDC188H7C350 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CCDC188H7C350 AC015688.4-201ENST00000580780 1647 ntBASIC15.46■□□□□ 0.06
CCDC188H7C350 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
CCDC188H7C350 AL591122.2-201ENST00000624125 1853 ntBASIC15.46■□□□□ 0.06
CCDC188H7C350 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC15.46■□□□□ 0.06
CCDC188H7C350 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CCDC188H7C350 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CCDC188H7C350 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.06
CCDC188H7C350 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CCDC188H7C350 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC15.46■□□□□ 0.06
CCDC188H7C350 FAM90A12P-201ENST00000519497 2375 ntBASIC15.46■□□□□ 0.06
CCDC188H7C350 FAM90A24P-201ENST00000520792 2369 ntBASIC15.46■□□□□ 0.06
CCDC188H7C350 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CCDC188H7C350 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC15.46■□□□□ 0.06
CCDC188H7C350 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CCDC188H7C350 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC188H7C350 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC188H7C350 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC15.45■□□□□ 0.06
CCDC188H7C350 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC188H7C350 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC15.45■□□□□ 0.06
CCDC188H7C350 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC188H7C350 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC188H7C350 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC188H7C350 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC188H7C350 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC188H7C350 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC188H7C350 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
CCDC188H7C350 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC15.45■□□□□ 0.06
CCDC188H7C350 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC188H7C350 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC188H7C350 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.45■□□□□ 0.06
CCDC188H7C350 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC188H7C350 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC15.45■□□□□ 0.06
CCDC188H7C350 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.45■□□□□ 0.06
CCDC188H7C350 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC15.45■□□□□ 0.06
CCDC188H7C350 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC188H7C350 AC125807.1-201ENST00000483097 614 ntBASIC15.45■□□□□ 0.06
CCDC188H7C350 AC131206.1-201ENST00000538078 1211 ntBASIC15.45■□□□□ 0.06
CCDC188H7C350 RARRES2P5-201ENST00000564013 466 ntBASIC15.45■□□□□ 0.06
CCDC188H7C350 AC140878.1-201ENST00000565277 250 ntBASIC15.45■□□□□ 0.06
CCDC188H7C350 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.45■□□□□ 0.06
CCDC188H7C350 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC15.45■□□□□ 0.06
CCDC188H7C350 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
CCDC188H7C350 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
CCDC188H7C350 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC15.45■□□□□ 0.06
CCDC188H7C350 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
CCDC188H7C350 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC15.45■□□□□ 0.06
CCDC188H7C350 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.45■□□□□ 0.06
CCDC188H7C350 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.45■□□□□ 0.06
CCDC188H7C350 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC188H7C350 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC188H7C350 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC188H7C350 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC188H7C350 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC15.45■□□□□ 0.06
CCDC188H7C350 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC15.45■□□□□ 0.06
CCDC188H7C350 DGCR9-201ENST00000609630 2415 ntBASIC15.45■□□□□ 0.06
CCDC188H7C350 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC188H7C350 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC188H7C350 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
CCDC188H7C350 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
CCDC188H7C350 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms