Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 AC004840.1-201ENST00000636359 365 ntBASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 WARS-203ENST00000358655 2466 ntTSL 2 BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 AC107918.4-201ENST00000641966 3141 ntBASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 TCAM1P-207ENST00000485295 1537 ntBASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 RN7SL399P-201ENST00000471648 279 ntBASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 IGHV3-42-201ENST00000520410 361 ntBASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 LSM12-202ENST00000585388 942 ntTSL 3 BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 AC092364.2-202ENST00000597012 1073 ntBASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 AC008738.7-201ENST00000609744 511 ntBASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 SALL4P5-201ENST00000419001 1760 ntBASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM49D1C9J1S8 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 MIR943-201ENST00000401286 94 ntBASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 FAM86GP-201ENST00000448322 971 ntBASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM49D1C9J1S8 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms