Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC12.07□□□□□ -0.48
FOXA2Q9Y261 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 OS9-207ENST00000439210 1946 ntTSL 2 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 KRT8P14-201ENST00000414254 1442 ntBASIC12.06□□□□□ -0.48
FOXA2Q9Y261 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 PTPA-220ENST00000436883 532 ntTSL 4 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 AP001582.1-201ENST00000525856 295 ntBASIC12.06□□□□□ -0.48
FOXA2Q9Y261 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 DUX4L47-201ENST00000566374 394 ntBASIC12.06□□□□□ -0.48
FOXA2Q9Y261 PAM16-204ENST00000571941 674 ntTSL 3 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 CECR7-204ENST00000609932 568 ntTSL 2 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 METTL26-214ENST00000614890 801 ntTSL 3 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 AL603764.1-201ENST00000636452 321 ntBASIC12.06□□□□□ -0.48
FOXA2Q9Y261 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 C1R-201ENST00000535233 2211 ntTSL 2 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA2Q9Y261 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA2Q9Y261 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC12.05□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms