Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC13.98□□□□□ -0.17
DEPDC4Q8N2C3 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
DEPDC4Q8N2C3 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
DEPDC4Q8N2C3 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
DEPDC4Q8N2C3 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC13.98□□□□□ -0.17
DEPDC4Q8N2C3 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC13.98□□□□□ -0.17
DEPDC4Q8N2C3 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC13.98□□□□□ -0.17
DEPDC4Q8N2C3 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
DEPDC4Q8N2C3 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
DEPDC4Q8N2C3 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
DEPDC4Q8N2C3 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
DEPDC4Q8N2C3 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC13.98□□□□□ -0.17
DEPDC4Q8N2C3 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
DEPDC4Q8N2C3 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
DEPDC4Q8N2C3 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 GOLGA8VP-201ENST00000559009 1798 ntBASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 EDF1-203ENST00000371649 790 ntTSL 2 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 RAC2-204ENST00000406508 893 ntTSL 5 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 RPL37AP1-201ENST00000412502 279 ntBASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 COQ6-210ENST00000554920 649 ntTSL 3 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 RN7SL204P-201ENST00000582831 262 ntBASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 AC092068.1-201ENST00000592525 454 ntTSL 2 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 HFE2-206ENST00000634927 506 ntTSL 4 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 GRN-214ENST00000589265 1632 ntTSL 5 BASIC13.97□□□□□ -0.17
DEPDC4Q8N2C3 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC13.96□□□□□ -0.17
DEPDC4Q8N2C3 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms