Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.33□□□□□ -0.28
CLRN1P58418 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC13.33□□□□□ -0.28
CLRN1P58418 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC13.33□□□□□ -0.28
CLRN1P58418 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
CLRN1P58418 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
CLRN1P58418 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 TLE1P1-201ENST00000422965 589 ntBASIC13.33□□□□□ -0.28
CLRN1P58418 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CLRN1P58418 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC13.33□□□□□ -0.28
CLRN1P58418 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC13.33□□□□□ -0.28
CLRN1P58418 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC13.33□□□□□ -0.28
CLRN1P58418 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC13.33□□□□□ -0.28
CLRN1P58418 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC13.33□□□□□ -0.28
CLRN1P58418 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
CLRN1P58418 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC13.33□□□□□ -0.28
CLRN1P58418 AC145423.3-201ENST00000615987 467 ntBASIC13.33□□□□□ -0.28
CLRN1P58418 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
CLRN1P58418 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC13.33□□□□□ -0.28
CLRN1P58418 AC139749.1-202ENST00000617529 3139 ntBASIC13.33□□□□□ -0.28
CLRN1P58418 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.33□□□□□ -0.28
CLRN1P58418 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC13.33□□□□□ -0.28
CLRN1P58418 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 MSTO2P-201ENST00000314835 1709 ntBASIC13.33□□□□□ -0.28
CLRN1P58418 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
CLRN1P58418 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC13.32□□□□□ -0.28
CLRN1P58418 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC13.32□□□□□ -0.28
CLRN1P58418 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CLRN1P58418 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CLRN1P58418 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CLRN1P58418 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CLRN1P58418 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
CLRN1P58418 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CLRN1P58418 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CLRN1P58418 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
CLRN1P58418 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC13.32□□□□□ -0.28
CLRN1P58418 FOS-202ENST00000535987 1402 ntTSL 2 BASIC13.32□□□□□ -0.28
CLRN1P58418 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC13.32□□□□□ -0.28
CLRN1P58418 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CLRN1P58418 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CLRN1P58418 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC13.32□□□□□ -0.28
CLRN1P58418 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
CLRN1P58418 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
CLRN1P58418 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CLRN1P58418 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CLRN1P58418 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CLRN1P58418 PTPA-220ENST00000436883 532 ntTSL 4 BASIC13.32□□□□□ -0.28
CLRN1P58418 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC13.32□□□□□ -0.28
CLRN1P58418 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC13.32□□□□□ -0.28
CLRN1P58418 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC13.32□□□□□ -0.28
CLRN1P58418 AC007389.4-201ENST00000454674 793 ntBASIC13.32□□□□□ -0.28
CLRN1P58418 RN7SL692P-201ENST00000464677 288 ntBASIC13.32□□□□□ -0.28
CLRN1P58418 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CLRN1P58418 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC13.32□□□□□ -0.28
CLRN1P58418 POLE2-203ENST00000553805 496 ntTSL 2 BASIC13.32□□□□□ -0.28
CLRN1P58418 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CLRN1P58418 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC13.32□□□□□ -0.28
CLRN1P58418 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC13.32□□□□□ -0.28
CLRN1P58418 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
CLRN1P58418 AL358472.5-202ENST00000641448 1267 ntBASIC13.32□□□□□ -0.28
CLRN1P58418 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
CLRN1P58418 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CLRN1P58418 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CLRN1P58418 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.32□□□□□ -0.28
CLRN1P58418 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CLRN1P58418 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CLRN1P58418 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CLRN1P58418 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CLRN1P58418 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.32□□□□□ -0.28
CLRN1P58418 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CLRN1P58418 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CLRN1P58418 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC13.32□□□□□ -0.28
CLRN1P58418 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC13.32□□□□□ -0.28
CLRN1P58418 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.32□□□□□ -0.28
CLRN1P58418 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
CLRN1P58418 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
CLRN1P58418 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLRN1P58418 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC13.31□□□□□ -0.28
CLRN1P58418 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC13.31□□□□□ -0.28
CLRN1P58418 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms