Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AC245100.3-201ENST00000441281 285 ntBASIC14.4□□□□□ -0.1
CLDN9O95484 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
CLDN9O95484 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.4□□□□□ -0.1
CLDN9O95484 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC14.4□□□□□ -0.1
CLDN9O95484 PTP4A1P2-201ENST00000546033 454 ntBASIC14.4□□□□□ -0.1
CLDN9O95484 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.4□□□□□ -0.1
CLDN9O95484 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC14.4□□□□□ -0.1
CLDN9O95484 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
CLDN9O95484 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
CLDN9O95484 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.4□□□□□ -0.1
CLDN9O95484 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
CLDN9O95484 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CLDN9O95484 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.4□□□□□ -0.1
CLDN9O95484 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC14.4□□□□□ -0.1
CLDN9O95484 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CLDN9O95484 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CLDN9O95484 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.39□□□□□ -0.11
CLDN9O95484 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.39□□□□□ -0.11
CLDN9O95484 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
CLDN9O95484 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.39□□□□□ -0.11
CLDN9O95484 RN7SKP230-201ENST00000365642 335 ntBASIC14.39□□□□□ -0.11
CLDN9O95484 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC14.39□□□□□ -0.11
CLDN9O95484 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 MESTP3-201ENST00000503460 968 ntBASIC14.39□□□□□ -0.11
CLDN9O95484 TDH-203ENST00000531764 1110 ntBASIC14.39□□□□□ -0.11
CLDN9O95484 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.39□□□□□ -0.11
CLDN9O95484 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.39□□□□□ -0.11
CLDN9O95484 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC14.39□□□□□ -0.11
CLDN9O95484 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.39□□□□□ -0.11
CLDN9O95484 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.39□□□□□ -0.11
CLDN9O95484 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC14.39□□□□□ -0.11
CLDN9O95484 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.39□□□□□ -0.11
CLDN9O95484 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.39□□□□□ -0.11
CLDN9O95484 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.39□□□□□ -0.11
CLDN9O95484 MYADML-201ENST00000474610 2147 ntBASIC14.39□□□□□ -0.11
CLDN9O95484 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.39□□□□□ -0.11
CLDN9O95484 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
CLDN9O95484 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.39□□□□□ -0.11
CLDN9O95484 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CLDN9O95484 CLUHP2-201ENST00000426660 1303 ntBASIC14.39□□□□□ -0.11
CLDN9O95484 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLDN9O95484 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CLDN9O95484 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC14.39□□□□□ -0.11
CLDN9O95484 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLDN9O95484 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.38□□□□□ -0.11
CLDN9O95484 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.38□□□□□ -0.11
CLDN9O95484 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLDN9O95484 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC14.38□□□□□ -0.11
CLDN9O95484 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.38□□□□□ -0.11
CLDN9O95484 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CLDN9O95484 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLDN9O95484 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLDN9O95484 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLDN9O95484 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLDN9O95484 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLDN9O95484 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CLDN9O95484 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLDN9O95484 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLDN9O95484 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLDN9O95484 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLDN9O95484 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms