Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 METTL23-205ENST00000588302 925 ntTSL 5 BASIC13.25□□□□□ -0.29
MMP28Q9H239 SSH2-211ENST00000590153 570 ntTSL 4 BASIC13.25□□□□□ -0.29
MMP28Q9H239 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 AC084121.4-201ENST00000641598 221 ntBASIC13.25□□□□□ -0.29
MMP28Q9H239 AF228730.8-201ENST00000642140 221 ntBASIC13.25□□□□□ -0.29
MMP28Q9H239 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
MMP28Q9H239 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC13.25□□□□□ -0.29
MMP28Q9H239 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 OS9-218ENST00000551035 2246 ntTSL 2 BASIC13.25□□□□□ -0.29
MMP28Q9H239 AC023794.5-201ENST00000564380 2157 ntBASIC13.25□□□□□ -0.29
MMP28Q9H239 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 AL365181.3-201ENST00000605886 3222 ntBASIC13.25□□□□□ -0.29
MMP28Q9H239 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
MMP28Q9H239 PLD1-201ENST00000331659 2906 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC13.25□□□□□ -0.29
MMP28Q9H239 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC13.25□□□□□ -0.29
MMP28Q9H239 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
MMP28Q9H239 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC13.24□□□□□ -0.29
MMP28Q9H239 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC13.24□□□□□ -0.29
MMP28Q9H239 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC13.24□□□□□ -0.29
MMP28Q9H239 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
MMP28Q9H239 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC13.24□□□□□ -0.29
MMP28Q9H239 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC13.24□□□□□ -0.29
MMP28Q9H239 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
MMP28Q9H239 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC13.24□□□□□ -0.29
MMP28Q9H239 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC13.24□□□□□ -0.29
MMP28Q9H239 FAM220BP-201ENST00000377689 816 ntBASIC13.24□□□□□ -0.29
MMP28Q9H239 MIR770-201ENST00000390219 98 ntBASIC13.24□□□□□ -0.29
MMP28Q9H239 SYS1-203ENST00000414310 795 ntTSL 3 BASIC13.24□□□□□ -0.29
MMP28Q9H239 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC13.24□□□□□ -0.29
MMP28Q9H239 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 TPT1P11-201ENST00000458482 498 ntBASIC13.24□□□□□ -0.29
MMP28Q9H239 SLC25A39P2-201ENST00000537614 270 ntBASIC13.24□□□□□ -0.29
MMP28Q9H239 MIR3197-201ENST00000582241 73 ntBASIC13.24□□□□□ -0.29
MMP28Q9H239 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC13.24□□□□□ -0.29
MMP28Q9H239 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC13.24□□□□□ -0.29
MMP28Q9H239 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC13.24□□□□□ -0.29
MMP28Q9H239 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
MMP28Q9H239 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
MMP28Q9H239 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC13.24□□□□□ -0.29
MMP28Q9H239 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
MMP28Q9H239 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC13.24□□□□□ -0.29
MMP28Q9H239 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
MMP28Q9H239 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
MMP28Q9H239 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC13.23□□□□□ -0.29
MMP28Q9H239 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.23□□□□□ -0.29
MMP28Q9H239 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 TOE1-201ENST00000372090 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
MMP28Q9H239 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC13.23□□□□□ -0.29
MMP28Q9H239 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC13.23□□□□□ -0.29
MMP28Q9H239 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC13.23□□□□□ -0.29
MMP28Q9H239 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC13.23□□□□□ -0.29
MMP28Q9H239 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms