Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RAE1P78406 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
RAE1P78406 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RAE1P78406 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RAE1P78406 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RAE1P78406 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC14.07□□□□□ -0.16
RAE1P78406 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.07□□□□□ -0.16
RAE1P78406 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.07□□□□□ -0.16
RAE1P78406 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC14.07□□□□□ -0.16
RAE1P78406 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC14.07□□□□□ -0.16
RAE1P78406 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.07□□□□□ -0.16
RAE1P78406 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
RAE1P78406 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
RAE1P78406 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 NFIC-211ENST00000641145 8399 ntBASIC14.07□□□□□ -0.16
RAE1P78406 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.07□□□□□ -0.16
RAE1P78406 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.07□□□□□ -0.16
RAE1P78406 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.07□□□□□ -0.16
RAE1P78406 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.07□□□□□ -0.16
RAE1P78406 FAM197Y7-201ENST00000432892 766 ntBASIC14.07□□□□□ -0.16
RAE1P78406 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.07□□□□□ -0.16
RAE1P78406 FTH1P14-201ENST00000482930 551 ntBASIC14.07□□□□□ -0.16
RAE1P78406 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 RNA5SP486-201ENST00000515961 83 ntBASIC14.07□□□□□ -0.16
RAE1P78406 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.07□□□□□ -0.16
RAE1P78406 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.07□□□□□ -0.16
RAE1P78406 AC015936.2-201ENST00000593177 259 ntBASIC14.07□□□□□ -0.16
RAE1P78406 AC027307.3-201ENST00000594262 1100 ntBASIC14.07□□□□□ -0.16
RAE1P78406 AC244669.2-201ENST00000612320 853 ntBASIC14.07□□□□□ -0.16
RAE1P78406 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
RAE1P78406 IGHV3-72-202ENST00000621503 303 ntBASIC14.07□□□□□ -0.16
RAE1P78406 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.07□□□□□ -0.16
RAE1P78406 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
RAE1P78406 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC14.07□□□□□ -0.16
RAE1P78406 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.07□□□□□ -0.16
RAE1P78406 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
RAE1P78406 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.07□□□□□ -0.16
RAE1P78406 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RAE1P78406 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
RAE1P78406 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
RAE1P78406 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.06□□□□□ -0.16
RAE1P78406 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RAE1P78406 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.06□□□□□ -0.16
RAE1P78406 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
RAE1P78406 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RAE1P78406 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RAE1P78406 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
RAE1P78406 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RAE1P78406 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RAE1P78406 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
RAE1P78406 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
RAE1P78406 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RAE1P78406 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RAE1P78406 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RAE1P78406 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.06□□□□□ -0.16
RAE1P78406 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
RAE1P78406 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.06□□□□□ -0.16
RAE1P78406 AC004945.1-201ENST00000416738 983 ntBASIC14.06□□□□□ -0.16
RAE1P78406 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RAE1P78406 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RAE1P78406 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC14.06□□□□□ -0.16
RAE1P78406 PUDPP3-201ENST00000445368 636 ntBASIC14.06□□□□□ -0.16
RAE1P78406 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.06□□□□□ -0.16
RAE1P78406 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.06□□□□□ -0.16
RAE1P78406 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.06□□□□□ -0.16
RAE1P78406 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC14.06□□□□□ -0.16
RAE1P78406 AC233724.13-201ENST00000598383 410 ntBASIC14.06□□□□□ -0.16
RAE1P78406 OR10B1P-201ENST00000601666 907 ntBASIC14.06□□□□□ -0.16
RAE1P78406 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.06□□□□□ -0.16
RAE1P78406 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.06□□□□□ -0.16
RAE1P78406 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RAE1P78406 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RAE1P78406 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RAE1P78406 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.06□□□□□ -0.16
RAE1P78406 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RAE1P78406 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
RAE1P78406 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
RAE1P78406 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms