Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 GRN-222ENST00000639447 1314 ntTSL 2 BASIC15.69■□□□□ 0.1
USP46P62068 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
USP46P62068 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
USP46P62068 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
USP46P62068 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC15.69■□□□□ 0.1
USP46P62068 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.69■□□□□ 0.1
USP46P62068 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.69■□□□□ 0.1
USP46P62068 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 ZBED1P1-201ENST00000502364 1930 ntBASIC15.69■□□□□ 0.1
USP46P62068 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC15.69■□□□□ 0.1
USP46P62068 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC15.69■□□□□ 0.1
USP46P62068 HNRNPA1P63-201ENST00000427917 963 ntBASIC15.69■□□□□ 0.1
USP46P62068 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC15.69■□□□□ 0.1
USP46P62068 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC15.69■□□□□ 0.1
USP46P62068 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
USP46P62068 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
USP46P62068 ETFRF1-205ENST00000555711 783 ntTSL 3 BASIC15.69■□□□□ 0.1
USP46P62068 EMC4-208ENST00000559078 599 ntTSL 3 BASIC15.69■□□□□ 0.1
USP46P62068 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC15.69■□□□□ 0.1
USP46P62068 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC15.69■□□□□ 0.1
USP46P62068 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
USP46P62068 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
USP46P62068 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.69■□□□□ 0.1
USP46P62068 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
USP46P62068 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC15.69■□□□□ 0.1
USP46P62068 LINC00528-201ENST00000600723 2160 ntBASIC15.69■□□□□ 0.1
USP46P62068 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.69■□□□□ 0.1
USP46P62068 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
USP46P62068 AC007686.3-201ENST00000619017 3487 ntBASIC15.69■□□□□ 0.1
USP46P62068 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP46P62068 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.68■□□□□ 0.1
USP46P62068 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USP46P62068 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP46P62068 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
USP46P62068 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USP46P62068 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC15.68■□□□□ 0.1
USP46P62068 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP46P62068 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
USP46P62068 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP46P62068 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP46P62068 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
USP46P62068 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.68■□□□□ 0.1
USP46P62068 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC15.68■□□□□ 0.1
USP46P62068 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP46P62068 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
USP46P62068 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
USP46P62068 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP46P62068 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP46P62068 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC15.68■□□□□ 0.1
USP46P62068 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USP46P62068 POM121L10P-201ENST00000436994 1285 ntBASIC15.68■□□□□ 0.1
USP46P62068 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC15.68■□□□□ 0.1
USP46P62068 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC15.68■□□□□ 0.1
USP46P62068 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC15.68■□□□□ 0.1
USP46P62068 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC15.68■□□□□ 0.1
USP46P62068 KLK11-210ENST00000600362 759 ntTSL 3 BASIC15.68■□□□□ 0.1
USP46P62068 UBE2Q2P6-202ENST00000617217 443 ntTSL 5 BASIC15.68■□□□□ 0.1
USP46P62068 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC15.68■□□□□ 0.1
USP46P62068 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.68■□□□□ 0.1
USP46P62068 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP46P62068 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP46P62068 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP46P62068 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15.68■□□□□ 0.1
USP46P62068 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.68■□□□□ 0.1
USP46P62068 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USP46P62068 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USP46P62068 GRK6P1-201ENST00000400595 1711 ntBASIC15.68■□□□□ 0.1
USP46P62068 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
USP46P62068 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USP46P62068 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
USP46P62068 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USP46P62068 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP46P62068 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP46P62068 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC15.68■□□□□ 0.1
USP46P62068 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP46P62068 AGAP7P-201ENST00000582299 2062 ntBASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 2588.5 ms