Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 DENND3-221ENST00000523308 2959 ntTSL 2 BASIC12.47□□□□□ -0.41
HOXA1P49639 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC12.47□□□□□ -0.41
HOXA1P49639 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 ARNTL-202ENST00000401424 2788 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC12.46□□□□□ -0.41
HOXA1P49639 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HOXA1P49639 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXA1P49639 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
HOXA1P49639 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC12.46□□□□□ -0.41
HOXA1P49639 PIM1-201ENST00000373509 2650 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXA1P49639 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXA1P49639 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
HOXA1P49639 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
HOXA1P49639 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC12.46□□□□□ -0.41
HOXA1P49639 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXA1P49639 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC12.46□□□□□ -0.41
HOXA1P49639 MVP-202ENST00000395353 2925 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
HOXA1P49639 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXA1P49639 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HOXA1P49639 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC12.46□□□□□ -0.41
HOXA1P49639 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXA1P49639 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HOXA1P49639 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXA1P49639 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXA1P49639 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC12.46□□□□□ -0.41
HOXA1P49639 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXA1P49639 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXA1P49639 RPS19-201ENST00000221975 500 ntTSL 3 BASIC12.46□□□□□ -0.41
HOXA1P49639 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
HOXA1P49639 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXA1P49639 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC12.46□□□□□ -0.41
HOXA1P49639 AC004945.1-201ENST00000416738 983 ntBASIC12.46□□□□□ -0.41
HOXA1P49639 AC005237.2-201ENST00000434368 219 ntBASIC12.46□□□□□ -0.41
HOXA1P49639 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC12.46□□□□□ -0.41
HOXA1P49639 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC12.46□□□□□ -0.41
HOXA1P49639 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC12.46□□□□□ -0.41
HOXA1P49639 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC12.46□□□□□ -0.41
HOXA1P49639 TSFM-210ENST00000550559 897 ntTSL 5 BASIC12.46□□□□□ -0.41
HOXA1P49639 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC12.46□□□□□ -0.41
HOXA1P49639 CMC2-214ENST00000565925 640 ntTSL 5 BASIC12.46□□□□□ -0.41
HOXA1P49639 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.41
HOXA1P49639 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC12.46□□□□□ -0.41
HOXA1P49639 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC12.46□□□□□ -0.41
HOXA1P49639 AC105021.1-202ENST00000570572 669 ntBASIC12.46□□□□□ -0.41
HOXA1P49639 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC12.46□□□□□ -0.41
HOXA1P49639 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.41
HOXA1P49639 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
HOXA1P49639 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HOXA1P49639 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXA1P49639 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXA1P49639 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC12.46□□□□□ -0.41
HOXA1P49639 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC12.46□□□□□ -0.41
HOXA1P49639 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HOXA1P49639 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.42
HOXA1P49639 ACSM2B-201ENST00000329697 2935 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HOXA1P49639 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.42
HOXA1P49639 FAM214B-204ENST00000378566 2566 ntTSL 2 BASIC12.46□□□□□ -0.42
HOXA1P49639 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
HOXA1P49639 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC12.46□□□□□ -0.42
HOXA1P49639 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC12.46□□□□□ -0.42
HOXA1P49639 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
HOXA1P49639 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HOXA1P49639 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
HOXA1P49639 SON-203ENST00000381679 7860 ntTSL 5 BASIC12.46□□□□□ -0.42
HOXA1P49639 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HOXA1P49639 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC12.46□□□□□ -0.42
HOXA1P49639 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.42
HOXA1P49639 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC12.46□□□□□ -0.42
HOXA1P49639 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HOXA1P49639 GSN-209ENST00000449733 2702 ntTSL 2 BASIC12.46□□□□□ -0.42
HOXA1P49639 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC12.45□□□□□ -0.42
HOXA1P49639 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC12.45□□□□□ -0.42
HOXA1P49639 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 TP73-209ENST00000603362 1668 ntTSL 5 BASIC12.45□□□□□ -0.42
HOXA1P49639 ACE3P-201ENST00000423435 1973 ntBASIC12.45□□□□□ -0.42
HOXA1P49639 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC12.45□□□□□ -0.42
HOXA1P49639 RET-205ENST00000615310 4337 ntTSL 5 BASIC12.45□□□□□ -0.42
HOXA1P49639 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC12.45□□□□□ -0.42
HOXA1P49639 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC12.45□□□□□ -0.42
HOXA1P49639 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC12.45□□□□□ -0.42
HOXA1P49639 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
HOXA1P49639 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms