Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RPSAP52-203ENST00000622976 1023 ntBASIC14.51□□□□□ -0.09
HNF4AP41235 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HNF4AP41235 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
HNF4AP41235 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HNF4AP41235 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HNF4AP41235 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.51□□□□□ -0.09
HNF4AP41235 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HNF4AP41235 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HNF4AP41235 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HNF4AP41235 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.51□□□□□ -0.09
HNF4AP41235 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
HNF4AP41235 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HNF4AP41235 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HNF4AP41235 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HNF4AP41235 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
HNF4AP41235 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.5□□□□□ -0.09
HNF4AP41235 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
HNF4AP41235 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
HNF4AP41235 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
HNF4AP41235 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.5□□□□□ -0.09
HNF4AP41235 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.5□□□□□ -0.09
HNF4AP41235 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.5□□□□□ -0.09
HNF4AP41235 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.5□□□□□ -0.09
HNF4AP41235 TLE1P1-201ENST00000422965 589 ntBASIC14.5□□□□□ -0.09
HNF4AP41235 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.5□□□□□ -0.09
HNF4AP41235 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.5□□□□□ -0.09
HNF4AP41235 ACTG1P3-201ENST00000431775 1114 ntBASIC14.5□□□□□ -0.09
HNF4AP41235 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 AC007389.4-201ENST00000454674 793 ntBASIC14.5□□□□□ -0.09
HNF4AP41235 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.5□□□□□ -0.09
HNF4AP41235 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC14.5□□□□□ -0.09
HNF4AP41235 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC14.5□□□□□ -0.09
HNF4AP41235 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.5□□□□□ -0.09
HNF4AP41235 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
HNF4AP41235 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.5□□□□□ -0.09
HNF4AP41235 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
HNF4AP41235 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
HNF4AP41235 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC14.5□□□□□ -0.09
HNF4AP41235 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.5□□□□□ -0.09
HNF4AP41235 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.5□□□□□ -0.09
HNF4AP41235 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HNF4AP41235 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
HNF4AP41235 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC14.5□□□□□ -0.09
HNF4AP41235 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.49□□□□□ -0.09
HNF4AP41235 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
HNF4AP41235 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.49□□□□□ -0.09
HNF4AP41235 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
HNF4AP41235 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.49□□□□□ -0.09
HNF4AP41235 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
HNF4AP41235 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
HNF4AP41235 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC14.49□□□□□ -0.09
HNF4AP41235 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
HNF4AP41235 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.49□□□□□ -0.09
HNF4AP41235 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14.49□□□□□ -0.09
HNF4AP41235 BAATP1-201ENST00000412284 1225 ntBASIC14.49□□□□□ -0.09
HNF4AP41235 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.49□□□□□ -0.09
HNF4AP41235 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.49□□□□□ -0.09
HNF4AP41235 TPT1P11-201ENST00000458482 498 ntBASIC14.49□□□□□ -0.09
HNF4AP41235 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.49□□□□□ -0.09
HNF4AP41235 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
HNF4AP41235 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.49□□□□□ -0.09
HNF4AP41235 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms