Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
MSX2P35548 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
MSX2P35548 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
MSX2P35548 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC14.27□□□□□ -0.12
MSX2P35548 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC14.27□□□□□ -0.12
MSX2P35548 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
MSX2P35548 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
MSX2P35548 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
MSX2P35548 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC14.27□□□□□ -0.12
MSX2P35548 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
MSX2P35548 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
MSX2P35548 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.27□□□□□ -0.12
MSX2P35548 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
MSX2P35548 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
MSX2P35548 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC14.27□□□□□ -0.12
MSX2P35548 KRT8P14-201ENST00000414254 1442 ntBASIC14.27□□□□□ -0.12
MSX2P35548 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
MSX2P35548 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
MSX2P35548 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
MSX2P35548 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.27□□□□□ -0.13
MSX2P35548 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.27□□□□□ -0.13
MSX2P35548 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC14.27□□□□□ -0.13
MSX2P35548 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
MSX2P35548 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.27□□□□□ -0.13
MSX2P35548 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.27□□□□□ -0.13
MSX2P35548 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
MSX2P35548 GATD1-206ENST00000526325 756 ntTSL 5 BASIC14.27□□□□□ -0.13
MSX2P35548 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC14.27□□□□□ -0.13
MSX2P35548 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC14.27□□□□□ -0.13
MSX2P35548 AC027601.4-201ENST00000611259 610 ntBASIC14.27□□□□□ -0.13
MSX2P35548 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.27□□□□□ -0.13
MSX2P35548 MIR6069-201ENST00000620069 79 ntBASIC14.27□□□□□ -0.13
MSX2P35548 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
MSX2P35548 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
MSX2P35548 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
MSX2P35548 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
MSX2P35548 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC14.27□□□□□ -0.13
MSX2P35548 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
MSX2P35548 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
MSX2P35548 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
MSX2P35548 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
MSX2P35548 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
MSX2P35548 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
MSX2P35548 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
MSX2P35548 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
MSX2P35548 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
MSX2P35548 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.27□□□□□ -0.13
MSX2P35548 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
MSX2P35548 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
MSX2P35548 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
MSX2P35548 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
MSX2P35548 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.26□□□□□ -0.13
MSX2P35548 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC14.26□□□□□ -0.13
MSX2P35548 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
MSX2P35548 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
MSX2P35548 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
MSX2P35548 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
MSX2P35548 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
MSX2P35548 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
MSX2P35548 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
MSX2P35548 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.26□□□□□ -0.13
MSX2P35548 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.26□□□□□ -0.13
MSX2P35548 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.26□□□□□ -0.13
MSX2P35548 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC14.26□□□□□ -0.13
MSX2P35548 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC14.26□□□□□ -0.13
MSX2P35548 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC14.26□□□□□ -0.13
MSX2P35548 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.26□□□□□ -0.13
MSX2P35548 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.26□□□□□ -0.13
MSX2P35548 PRR29-209ENST00000582540 967 ntTSL 2 BASIC14.26□□□□□ -0.13
MSX2P35548 KLK8-205ENST00000593490 267 ntTSL 3 BASIC14.26□□□□□ -0.13
MSX2P35548 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.26□□□□□ -0.13
MSX2P35548 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC14.26□□□□□ -0.13
MSX2P35548 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC14.26□□□□□ -0.13
MSX2P35548 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.26□□□□□ -0.13
MSX2P35548 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
MSX2P35548 SLC6A6P1-201ENST00000413933 1850 ntBASIC14.26□□□□□ -0.13
MSX2P35548 RN7SL832P-201ENST00000607781 1756 ntBASIC14.26□□□□□ -0.13
MSX2P35548 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
MSX2P35548 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
MSX2P35548 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
MSX2P35548 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.26□□□□□ -0.13
MSX2P35548 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
MSX2P35548 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
MSX2P35548 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
MSX2P35548 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC14.26□□□□□ -0.13
MSX2P35548 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX2P35548 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC14.25□□□□□ -0.13
MSX2P35548 AC068760.1-201ENST00000493579 1953 ntBASIC14.25□□□□□ -0.13
MSX2P35548 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX2P35548 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC14.25□□□□□ -0.13
MSX2P35548 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX2P35548 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
MSX2P35548 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC14.25□□□□□ -0.13
MSX2P35548 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
MSX2P35548 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
MSX2P35548 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
MSX2P35548 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC14.25□□□□□ -0.13
MSX2P35548 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.25□□□□□ -0.13
MSX2P35548 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX2P35548 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms