Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 AC004790.2-201ENST00000623588 572 ntBASIC11.27□□□□□ -0.61
HLA-DQA1P01909 AL645728.2-202ENST00000641679 227 ntBASIC11.27□□□□□ -0.61
HLA-DQA1P01909 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 C12orf43-202ENST00000445832 2397 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 KREMEN1-202ENST00000400335 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 TECTA-201ENST00000264037 6468 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 CYP26B1-205ENST00000546307 4331 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 C1orf167-202ENST00000433342 4545 ntAPPRIS P5 TSL 5 BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 ADAM12-202ENST00000368679 7938 ntAPPRIS P4 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 REXO1L1P-201ENST00000379010 6598 ntBASIC11.26□□□□□ -0.61
HLA-DQA1P01909 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 PDE4DIP-227ENST00000529945 8824 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 RTL5-202ENST00000609883 4105 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 ATP6V0CP3-201ENST00000417255 467 ntBASIC11.26□□□□□ -0.61
HLA-DQA1P01909 ELP6-209ENST00000446787 894 ntTSL 3 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 IGHV3-65-201ENST00000523210 341 ntBASIC11.26□□□□□ -0.61
HLA-DQA1P01909 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 AC116407.3-201ENST00000623905 1129 ntBASIC11.26□□□□□ -0.61
HLA-DQA1P01909 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 DUOX2-201ENST00000389039 6533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 AP002761.4-201ENST00000565433 3361 ntBASIC11.26□□□□□ -0.61
HLA-DQA1P01909 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 LILRP1-201ENST00000444199 1370 ntBASIC11.26□□□□□ -0.61
HLA-DQA1P01909 CACNA1C-214ENST00000399634 7590 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 CACNA1C-222ENST00000406454 7590 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 TCF23-201ENST00000296096 4882 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms