Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 MIR4683-201ENST00000579659 81 ntBASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 AL360270.3-201ENST00000609118 1348 ntBASIC14.92□□□□□ -0.02
TM9SF3Q9HD45 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 AL157414.3-201ENST00000624276 1954 ntBASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 CICP23-201ENST00000605013 2741 ntBASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 DPM3-202ENST00000368399 517 ntBASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 GHSR-202ENST00000427970 912 ntBASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 Z97180.1-201ENST00000445173 988 ntBASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 RNMTL1P1-201ENST00000454103 560 ntBASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 OARD1-204ENST00000464633 717 ntTSL 2 BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 RN7SL720P-201ENST00000488178 304 ntBASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 RN7SL774P-201ENST00000577467 290 ntBASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 AL645939.5-201ENST00000606834 243 ntBASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 AP000593.2-201ENST00000542775 1433 ntBASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TM9SF3Q9HD45 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 AC091951.1-201ENST00000512854 2465 ntBASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 AC011742.3-201ENST00000439053 820 ntBASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 AC106794.1-201ENST00000506935 792 ntBASIC14.9□□□□□ -0.02
TM9SF3Q9HD45 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms