Protein–RNA interactions for Protein: Q9HAU5

UPF2, Regulator of nonsense transcripts 2, humanhuman

Known RBP Predictions only

Length 1,272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2Q9HAU5 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 RPL37AP1-201ENST00000412502 279 ntBASIC18.37■□□□□ 0.53
UPF2Q9HAU5 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 AP000344.2-201ENST00000512987 629 ntBASIC18.37■□□□□ 0.53
UPF2Q9HAU5 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 AC004461.2-201ENST00000629517 803 ntBASIC18.37■□□□□ 0.53
UPF2Q9HAU5 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 STK40-201ENST00000359297 4837 ntTSL 2 BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC18.37■□□□□ 0.53
UPF2Q9HAU5 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 AC090505.1-201ENST00000430515 1834 ntBASIC18.36■□□□□ 0.53
UPF2Q9HAU5 FDX1P1-201ENST00000449115 551 ntBASIC18.36■□□□□ 0.53
UPF2Q9HAU5 SDHAP3-202ENST00000515467 728 ntBASIC18.36■□□□□ 0.53
UPF2Q9HAU5 KRT18P58-201ENST00000527480 1120 ntBASIC18.36■□□□□ 0.53
UPF2Q9HAU5 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 AC107918.4-201ENST00000641966 3141 ntBASIC18.36■□□□□ 0.53
UPF2Q9HAU5 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPF2Q9HAU5 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
UPF2Q9HAU5 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC18.35■□□□□ 0.53
UPF2Q9HAU5 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
UPF2Q9HAU5 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
UPF2Q9HAU5 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
UPF2Q9HAU5 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
UPF2Q9HAU5 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
UPF2Q9HAU5 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
UPF2Q9HAU5 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
UPF2Q9HAU5 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC18.35■□□□□ 0.53
UPF2Q9HAU5 KRT8P24-201ENST00000560290 1559 ntBASIC18.35■□□□□ 0.53
UPF2Q9HAU5 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
UPF2Q9HAU5 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC18.35■□□□□ 0.53
UPF2Q9HAU5 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
UPF2Q9HAU5 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
UPF2Q9HAU5 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
UPF2Q9HAU5 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
UPF2Q9HAU5 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
UPF2Q9HAU5 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms