Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 MVK-214ENST00000629016 1591 ntTSL 5 BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 KRT8P14-201ENST00000414254 1442 ntBASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 MX1-218ENST00000619682 1980 ntTSL 5 BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 AL139094.1-201ENST00000405549 1188 ntBASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 HLA-DRB6-201ENST00000411500 1235 ntBASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 AL589987.1-201ENST00000453380 819 ntBASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 SPDYE18-201ENST00000510091 1050 ntBASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 STOM-203ENST00000538954 1257 ntTSL 5 BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 BRI3BPP1-201ENST00000594224 787 ntBASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 AC099568.2-201ENST00000609194 695 ntBASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 AC007431.3-201ENST00000623221 587 ntBASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
POLR2J3Q9H1A7 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
POLR2J3Q9H1A7 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
POLR2J3Q9H1A7 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
POLR2J3Q9H1A7 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
POLR2J3Q9H1A7 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 MST1P2-201ENST00000457982 2291 ntBASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 AC131212.3-201ENST00000624087 4219 ntBASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 PON3-203ENST00000427422 894 ntTSL 3 BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 VDAC1P7-201ENST00000462417 847 ntBASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 TPRX2P-201ENST00000535362 881 ntBASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
POLR2J3Q9H1A7 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms