Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 KRT17P7-201ENST00000451704 1104 ntBASIC13.26□□□□□ -0.29
SKA3Q8IX90 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 AC026434.2-201ENST00000506094 1078 ntBASIC13.26□□□□□ -0.29
SKA3Q8IX90 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 CR383656.12-201ENST00000549567 513 ntBASIC13.26□□□□□ -0.29
SKA3Q8IX90 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 RPS15-202ENST00000585665 467 ntTSL 3 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 AL390755.1-201ENST00000623716 2027 ntBASIC13.26□□□□□ -0.29
SKA3Q8IX90 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SKA3Q8IX90 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC13.26□□□□□ -0.29
SKA3Q8IX90 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SKA3Q8IX90 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SKA3Q8IX90 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SKA3Q8IX90 AC023090.2-201ENST00000625182 2110 ntBASIC13.25□□□□□ -0.29
SKA3Q8IX90 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SKA3Q8IX90 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SKA3Q8IX90 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
SKA3Q8IX90 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SKA3Q8IX90 TP73-213ENST00000604479 1623 ntTSL 5 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SKA3Q8IX90 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SKA3Q8IX90 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
SKA3Q8IX90 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms