Protein–RNA interactions for Protein: Q7M4L6

SHF, SH2 domain-containing adapter protein F, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHFQ7M4L6 CICP8-201ENST00000455800 2813 ntBASIC13.56□□□□□ -0.24
SHFQ7M4L6 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SHFQ7M4L6 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
SHFQ7M4L6 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
SHFQ7M4L6 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SHFQ7M4L6 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
SHFQ7M4L6 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 AL137783.1-201ENST00000623494 1896 ntBASIC13.55□□□□□ -0.24
SHFQ7M4L6 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 RET-205ENST00000615310 4337 ntTSL 5 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 AC107890.1-201ENST00000422478 521 ntBASIC13.55□□□□□ -0.24
SHFQ7M4L6 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SHFQ7M4L6 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC13.55□□□□□ -0.24
SHFQ7M4L6 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SHFQ7M4L6 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
SHFQ7M4L6 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
SHFQ7M4L6 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SHFQ7M4L6 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SHFQ7M4L6 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SHFQ7M4L6 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SHFQ7M4L6 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SHFQ7M4L6 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SHFQ7M4L6 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SHFQ7M4L6 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SHFQ7M4L6 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SHFQ7M4L6 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SHFQ7M4L6 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SHFQ7M4L6 WRB-204ENST00000398753 699 ntTSL 3 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 SUN1-204ENST00000403868 978 ntTSL 2 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 DNAJB3-202ENST00000449667 1266 ntBASIC13.54□□□□□ -0.24
SHFQ7M4L6 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 SSH2-210ENST00000582084 560 ntTSL 3 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
SHFQ7M4L6 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SHFQ7M4L6 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SHFQ7M4L6 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SHFQ7M4L6 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SHFQ7M4L6 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC13.54□□□□□ -0.24
SHFQ7M4L6 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms