Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH6P52701 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC20.19■□□□□ 0.82
MSH6P52701 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH6P52701 AC009093.10-201ENST00000641956 1442 ntBASIC20.19■□□□□ 0.82
MSH6P52701 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH6P52701 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC20.19■□□□□ 0.82
MSH6P52701 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC20.19■□□□□ 0.82
MSH6P52701 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH6P52701 AL590440.2-201ENST00000641973 1595 ntBASIC20.19■□□□□ 0.82
MSH6P52701 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH6P52701 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC20.19■□□□□ 0.82
MSH6P52701 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC20.19■□□□□ 0.82
MSH6P52701 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
MSH6P52701 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC20.19■□□□□ 0.82
MSH6P52701 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH6P52701 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH6P52701 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC20.19■□□□□ 0.82
MSH6P52701 AC007950.2-201ENST00000615045 2347 ntBASIC20.19■□□□□ 0.82
MSH6P52701 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH6P52701 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH6P52701 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
MSH6P52701 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
MSH6P52701 CTSL-202ENST00000342020 933 ntTSL 2 BASIC20.19■□□□□ 0.82
MSH6P52701 JTB-202ENST00000356648 1040 ntTSL 2 BASIC20.19■□□□□ 0.82
MSH6P52701 NME2-201ENST00000393183 568 ntTSL 2 BASIC20.19■□□□□ 0.82
MSH6P52701 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC20.19■□□□□ 0.82
MSH6P52701 BPIFB5P-201ENST00000457066 1099 ntBASIC20.19■□□□□ 0.82
MSH6P52701 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC20.19■□□□□ 0.82
MSH6P52701 AC008026.2-201ENST00000495438 348 ntBASIC20.19■□□□□ 0.82
MSH6P52701 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC20.19■□□□□ 0.82
MSH6P52701 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC20.19■□□□□ 0.82
MSH6P52701 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC20.19■□□□□ 0.82
MSH6P52701 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
MSH6P52701 HELLS-212ENST00000630929 400 ntTSL 5 BASIC20.19■□□□□ 0.82
MSH6P52701 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
MSH6P52701 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC20.19■□□□□ 0.82
MSH6P52701 AP002353.1-201ENST00000528257 1599 ntBASIC20.19■□□□□ 0.82
MSH6P52701 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH6P52701 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH6P52701 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC20.18■□□□□ 0.82
MSH6P52701 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH6P52701 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
MSH6P52701 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC20.18■□□□□ 0.82
MSH6P52701 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
MSH6P52701 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
MSH6P52701 F10-203ENST00000409306 1450 ntTSL 3 BASIC20.18■□□□□ 0.82
MSH6P52701 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
MSH6P52701 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
MSH6P52701 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH6P52701 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC20.18■□□□□ 0.82
MSH6P52701 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC20.18■□□□□ 0.82
MSH6P52701 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC20.18■□□□□ 0.82
MSH6P52701 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH6P52701 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
MSH6P52701 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH6P52701 RNVU1-8-201ENST00000364272 125 ntBASIC20.18■□□□□ 0.82
MSH6P52701 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC20.18■□□□□ 0.82
MSH6P52701 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
MSH6P52701 OR8T1P-201ENST00000421347 918 ntBASIC20.18■□□□□ 0.82
MSH6P52701 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
MSH6P52701 VENTXP4-201ENST00000449029 958 ntBASIC20.18■□□□□ 0.82
MSH6P52701 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC20.18■□□□□ 0.82
MSH6P52701 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC20.18■□□□□ 0.82
MSH6P52701 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC20.18■□□□□ 0.82
MSH6P52701 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC20.18■□□□□ 0.82
MSH6P52701 AC013553.1-201ENST00000560906 267 ntBASIC20.18■□□□□ 0.82
MSH6P52701 DRG2-220ENST00000583355 891 ntTSL 3 BASIC20.18■□□□□ 0.82
MSH6P52701 AP003680.1-201ENST00000598970 3660 ntBASIC20.18■□□□□ 0.82
MSH6P52701 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC20.18■□□□□ 0.82
MSH6P52701 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH6P52701 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC20.17■□□□□ 0.82
MSH6P52701 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH6P52701 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
MSH6P52701 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH6P52701 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
MSH6P52701 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH6P52701 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH6P52701 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH6P52701 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC20.17■□□□□ 0.82
MSH6P52701 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH6P52701 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
MSH6P52701 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC20.17■□□□□ 0.82
MSH6P52701 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH6P52701 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH6P52701 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC20.17■□□□□ 0.82
MSH6P52701 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH6P52701 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
MSH6P52701 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC20.17■□□□□ 0.82
MSH6P52701 IGHVIII-5-2-201ENST00000522505 261 ntBASIC20.17■□□□□ 0.82
MSH6P52701 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
MSH6P52701 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC20.17■□□□□ 0.82
MSH6P52701 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
MSH6P52701 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH6P52701 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
MSH6P52701 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
MSH6P52701 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH6P52701 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH6P52701 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC20.17■□□□□ 0.82
MSH6P52701 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH6P52701 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms