Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
PTPN9P43378 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN9P43378 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN9P43378 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN9P43378 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN9P43378 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN9P43378 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN9P43378 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.45■□□□□ 0.06
PTPN9P43378 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN9P43378 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC15.45■□□□□ 0.06
PTPN9P43378 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
PTPN9P43378 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN9P43378 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN9P43378 KHSRPP1-201ENST00000427983 1768 ntBASIC15.45■□□□□ 0.06
PTPN9P43378 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN9P43378 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
PTPN9P43378 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN9P43378 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.45■□□□□ 0.06
PTPN9P43378 CNN2P10-201ENST00000443067 918 ntBASIC15.45■□□□□ 0.06
PTPN9P43378 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC15.45■□□□□ 0.06
PTPN9P43378 CHMP1AP1-201ENST00000445563 662 ntBASIC15.45■□□□□ 0.06
PTPN9P43378 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN9P43378 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC15.45■□□□□ 0.06
PTPN9P43378 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC15.45■□□□□ 0.06
PTPN9P43378 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC15.45■□□□□ 0.06
PTPN9P43378 SNX29P1-201ENST00000548357 1007 ntBASIC15.45■□□□□ 0.06
PTPN9P43378 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC15.45■□□□□ 0.06
PTPN9P43378 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.45■□□□□ 0.06
PTPN9P43378 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN9P43378 AC008825.2-201ENST00000603374 718 ntBASIC15.45■□□□□ 0.06
PTPN9P43378 AL358472.3-201ENST00000608147 415 ntBASIC15.45■□□□□ 0.06
PTPN9P43378 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC15.45■□□□□ 0.06
PTPN9P43378 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC15.45■□□□□ 0.06
PTPN9P43378 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.45■□□□□ 0.06
PTPN9P43378 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN9P43378 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC15.45■□□□□ 0.06
PTPN9P43378 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN9P43378 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN9P43378 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
PTPN9P43378 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC15.45■□□□□ 0.06
PTPN9P43378 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC15.45■□□□□ 0.06
PTPN9P43378 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN9P43378 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.45■□□□□ 0.06
PTPN9P43378 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
PTPN9P43378 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.44■□□□□ 0.06
PTPN9P43378 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
PTPN9P43378 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
PTPN9P43378 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
PTPN9P43378 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC15.44■□□□□ 0.06
PTPN9P43378 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC15.44■□□□□ 0.06
PTPN9P43378 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC15.44■□□□□ 0.06
PTPN9P43378 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC15.44■□□□□ 0.06
PTPN9P43378 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC15.44■□□□□ 0.06
PTPN9P43378 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
PTPN9P43378 AL009178.2-201ENST00000597278 2719 ntBASIC15.44■□□□□ 0.06
PTPN9P43378 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC15.44■□□□□ 0.06
PTPN9P43378 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 AL355994.2-201ENST00000447882 704 ntBASIC15.44■□□□□ 0.06
PTPN9P43378 GPR53P-205ENST00000457298 1084 ntBASIC15.44■□□□□ 0.06
PTPN9P43378 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC15.44■□□□□ 0.06
PTPN9P43378 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC15.44■□□□□ 0.06
PTPN9P43378 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC15.44■□□□□ 0.06
PTPN9P43378 AC104989.1-201ENST00000519711 778 ntBASIC15.44■□□□□ 0.06
PTPN9P43378 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC15.44■□□□□ 0.06
PTPN9P43378 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
PTPN9P43378 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC15.44■□□□□ 0.06
PTPN9P43378 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC15.44■□□□□ 0.06
PTPN9P43378 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC15.44■□□□□ 0.06
PTPN9P43378 AC023310.1-201ENST00000554836 735 ntBASIC15.44■□□□□ 0.06
PTPN9P43378 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC15.44■□□□□ 0.06
PTPN9P43378 PPY2P-201ENST00000582808 702 ntBASIC15.44■□□□□ 0.06
PTPN9P43378 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15.44■□□□□ 0.06
PTPN9P43378 MIR6074-201ENST00000612054 107 ntBASIC15.44■□□□□ 0.06
PTPN9P43378 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
PTPN9P43378 MVK-217ENST00000639206 367 ntTSL 5 BASIC15.44■□□□□ 0.06
PTPN9P43378 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.44■□□□□ 0.06
PTPN9P43378 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.44■□□□□ 0.06
PTPN9P43378 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC15.44■□□□□ 0.06
PTPN9P43378 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN9P43378 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms