Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 TRPM2-201ENST00000300481 5627 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 USP47-202ENST00000339865 7775 ntTSL 2 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 AL358334.2-201ENST00000553648 4714 ntTSL 2 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 USP6NL-205ENST00000609104 11377 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 CSF3-203ENST00000394148 622 ntTSL 3 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 CD63-210ENST00000550776 870 ntTSL 5 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 RIN3-211ENST00000557762 517 ntTSL 3 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 SLC25A6P4-201ENST00000586535 553 ntBASIC11.28□□□□□ -0.6
HLA-DQA1P01909 AC104692.2-201ENST00000603054 253 ntBASIC11.28□□□□□ -0.6
HLA-DQA1P01909 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 PCDHGB3-201ENST00000576222 4727 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 CACNA1G-214ENST00000505165 6633 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 AL607033.1-201ENST00000623900 1599 ntBASIC11.28□□□□□ -0.6
HLA-DQA1P01909 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 AC018665.1-201ENST00000622927 1362 ntBASIC11.28□□□□□ -0.6
HLA-DQA1P01909 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 BRPF3-201ENST00000339717 4820 ntTSL 5 BASIC11.28□□□□□ -0.6
HLA-DQA1P01909 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.6
HLA-DQA1P01909 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
HLA-DQA1P01909 C15orf39-202ENST00000394987 4430 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.6
HLA-DQA1P01909 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
HLA-DQA1P01909 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
HLA-DQA1P01909 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
HLA-DQA1P01909 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC11.27□□□□□ -0.6
HLA-DQA1P01909 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC11.27□□□□□ -0.6
HLA-DQA1P01909 FOS-202ENST00000535987 1402 ntTSL 2 BASIC11.27□□□□□ -0.6
HLA-DQA1P01909 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC11.27□□□□□ -0.6
HLA-DQA1P01909 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC11.27□□□□□ -0.6
HLA-DQA1P01909 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC11.27□□□□□ -0.6
HLA-DQA1P01909 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.6
HLA-DQA1P01909 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
HLA-DQA1P01909 TP73-203ENST00000357733 4899 ntTSL 5 BASIC11.27□□□□□ -0.6
HLA-DQA1P01909 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 TBC1D24-201ENST00000293970 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 FAM185BP-201ENST00000443595 716 ntBASIC11.27□□□□□ -0.61
HLA-DQA1P01909 PPIE-208ENST00000470213 927 ntTSL 3 BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC11.27□□□□□ -0.61
HLA-DQA1P01909 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC11.27□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms