Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC18.34■□□□□ 0.53
CACNA1FO60840 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.34■□□□□ 0.53
CACNA1FO60840 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC18.34■□□□□ 0.53
CACNA1FO60840 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC18.34■□□□□ 0.53
CACNA1FO60840 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC18.34■□□□□ 0.53
CACNA1FO60840 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CACNA1FO60840 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CACNA1FO60840 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CACNA1FO60840 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC18.34■□□□□ 0.53
CACNA1FO60840 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
CACNA1FO60840 USP39-220ENST00000613444 2161 ntTSL 2 BASIC18.34■□□□□ 0.53
CACNA1FO60840 AC007191.1-201ENST00000623179 2995 ntBASIC18.34■□□□□ 0.53
CACNA1FO60840 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC18.33■□□□□ 0.53
CACNA1FO60840 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
CACNA1FO60840 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CACNA1FO60840 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CACNA1FO60840 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CACNA1FO60840 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CACNA1FO60840 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CACNA1FO60840 MSRA-203ENST00000441698 788 ntTSL 2 BASIC18.33■□□□□ 0.53
CACNA1FO60840 AC245884.6-201ENST00000515672 1067 ntBASIC18.33■□□□□ 0.53
CACNA1FO60840 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC18.33■□□□□ 0.53
CACNA1FO60840 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.53
CACNA1FO60840 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CACNA1FO60840 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CACNA1FO60840 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.53
CACNA1FO60840 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC18.33■□□□□ 0.53
CACNA1FO60840 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CACNA1FO60840 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CACNA1FO60840 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CACNA1FO60840 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC18.33■□□□□ 0.53
CACNA1FO60840 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
CACNA1FO60840 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CACNA1FO60840 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CACNA1FO60840 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CACNA1FO60840 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
CACNA1FO60840 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CACNA1FO60840 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CACNA1FO60840 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CACNA1FO60840 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CACNA1FO60840 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC18.33■□□□□ 0.52
CACNA1FO60840 AC152010.1-201ENST00000415779 2006 ntBASIC18.33■□□□□ 0.52
CACNA1FO60840 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC18.33■□□□□ 0.52
CACNA1FO60840 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CACNA1FO60840 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC18.33■□□□□ 0.52
CACNA1FO60840 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CACNA1FO60840 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC18.33■□□□□ 0.52
CACNA1FO60840 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC18.33■□□□□ 0.52
CACNA1FO60840 NDUFS6P1-201ENST00000485187 316 ntBASIC18.33■□□□□ 0.52
CACNA1FO60840 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC18.33■□□□□ 0.52
CACNA1FO60840 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CACNA1FO60840 MIR3677-201ENST00000578964 60 ntBASIC18.33■□□□□ 0.52
CACNA1FO60840 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CACNA1FO60840 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CACNA1FO60840 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CACNA1FO60840 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CACNA1FO60840 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC18.32■□□□□ 0.52
CACNA1FO60840 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CACNA1FO60840 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CACNA1FO60840 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
CACNA1FO60840 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CACNA1FO60840 HSPA8P5-201ENST00000456928 2069 ntBASIC18.32■□□□□ 0.52
CACNA1FO60840 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CACNA1FO60840 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC18.32■□□□□ 0.52
CACNA1FO60840 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC18.32■□□□□ 0.52
CACNA1FO60840 AC024681.1-201ENST00000521917 487 ntBASIC18.32■□□□□ 0.52
CACNA1FO60840 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC18.32■□□□□ 0.52
CACNA1FO60840 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC18.32■□□□□ 0.52
CACNA1FO60840 RN7SL665P-201ENST00000578793 300 ntBASIC18.32■□□□□ 0.52
CACNA1FO60840 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC18.32■□□□□ 0.52
CACNA1FO60840 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC18.32■□□□□ 0.52
CACNA1FO60840 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CACNA1FO60840 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CACNA1FO60840 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC18.32■□□□□ 0.52
CACNA1FO60840 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CACNA1FO60840 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC18.32■□□□□ 0.52
CACNA1FO60840 TCAM1P-207ENST00000485295 1537 ntBASIC18.32■□□□□ 0.52
CACNA1FO60840 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CACNA1FO60840 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC18.32■□□□□ 0.52
CACNA1FO60840 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CACNA1FO60840 AC012617.1-204ENST00000586340 2305 ntBASIC18.32■□□□□ 0.52
CACNA1FO60840 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CACNA1FO60840 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CACNA1FO60840 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CACNA1FO60840 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CACNA1FO60840 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CACNA1FO60840 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC18.31■□□□□ 0.52
CACNA1FO60840 PPP1R2P4-201ENST00000424051 595 ntBASIC18.31■□□□□ 0.52
CACNA1FO60840 AC011742.3-201ENST00000439053 820 ntBASIC18.31■□□□□ 0.52
CACNA1FO60840 PHBP15-201ENST00000574228 665 ntBASIC18.31■□□□□ 0.52
CACNA1FO60840 NAT9-220ENST00000582870 896 ntTSL 5 BASIC18.31■□□□□ 0.52
CACNA1FO60840 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CACNA1FO60840 COCH-203ENST00000460581 2688 ntTSL 2 BASIC18.31■□□□□ 0.52
CACNA1FO60840 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CACNA1FO60840 HSPA7-201ENST00000445535 1927 ntBASIC18.31■□□□□ 0.52
CACNA1FO60840 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CACNA1FO60840 MYB-201ENST00000316528 3571 ntTSL 5 BASIC18.31■□□□□ 0.52
CACNA1FO60840 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CACNA1FO60840 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC18.31■□□□□ 0.52
CACNA1FO60840 LINC01815-202ENST00000641468 1409 ntBASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms