Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.92■□□□□ 0.94
EXOSC3Q9NQT5 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.92■□□□□ 0.94
EXOSC3Q9NQT5 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
EXOSC3Q9NQT5 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
EXOSC3Q9NQT5 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
EXOSC3Q9NQT5 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
EXOSC3Q9NQT5 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
EXOSC3Q9NQT5 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
EXOSC3Q9NQT5 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
EXOSC3Q9NQT5 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
EXOSC3Q9NQT5 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
EXOSC3Q9NQT5 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
EXOSC3Q9NQT5 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
EXOSC3Q9NQT5 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
EXOSC3Q9NQT5 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
EXOSC3Q9NQT5 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.91■□□□□ 0.94
EXOSC3Q9NQT5 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.91■□□□□ 0.94
EXOSC3Q9NQT5 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
EXOSC3Q9NQT5 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
EXOSC3Q9NQT5 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.91■□□□□ 0.94
EXOSC3Q9NQT5 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
EXOSC3Q9NQT5 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
EXOSC3Q9NQT5 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
EXOSC3Q9NQT5 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
EXOSC3Q9NQT5 ALDH1A3-203ENST00000557963 1670 ntBASIC20.9■□□□□ 0.94
EXOSC3Q9NQT5 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
EXOSC3Q9NQT5 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
EXOSC3Q9NQT5 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
EXOSC3Q9NQT5 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
EXOSC3Q9NQT5 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
EXOSC3Q9NQT5 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.9■□□□□ 0.94
EXOSC3Q9NQT5 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.9■□□□□ 0.94
EXOSC3Q9NQT5 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.9■□□□□ 0.94
EXOSC3Q9NQT5 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.9■□□□□ 0.94
EXOSC3Q9NQT5 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.9■□□□□ 0.94
EXOSC3Q9NQT5 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
EXOSC3Q9NQT5 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.9■□□□□ 0.94
EXOSC3Q9NQT5 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
EXOSC3Q9NQT5 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
EXOSC3Q9NQT5 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
EXOSC3Q9NQT5 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
EXOSC3Q9NQT5 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.89■□□□□ 0.94
EXOSC3Q9NQT5 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
EXOSC3Q9NQT5 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
EXOSC3Q9NQT5 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
EXOSC3Q9NQT5 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
EXOSC3Q9NQT5 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.88■□□□□ 0.93
EXOSC3Q9NQT5 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
EXOSC3Q9NQT5 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.88■□□□□ 0.93
EXOSC3Q9NQT5 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.88■□□□□ 0.93
EXOSC3Q9NQT5 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
EXOSC3Q9NQT5 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
EXOSC3Q9NQT5 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.87■□□□□ 0.93
EXOSC3Q9NQT5 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.87■□□□□ 0.93
EXOSC3Q9NQT5 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.87■□□□□ 0.93
EXOSC3Q9NQT5 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.87■□□□□ 0.93
EXOSC3Q9NQT5 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
EXOSC3Q9NQT5 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
EXOSC3Q9NQT5 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
EXOSC3Q9NQT5 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
EXOSC3Q9NQT5 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
EXOSC3Q9NQT5 RARRES2P1-201ENST00000474487 481 ntBASIC20.86■□□□□ 0.93
EXOSC3Q9NQT5 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.86■□□□□ 0.93
EXOSC3Q9NQT5 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.86■□□□□ 0.93
EXOSC3Q9NQT5 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
EXOSC3Q9NQT5 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
EXOSC3Q9NQT5 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
EXOSC3Q9NQT5 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
EXOSC3Q9NQT5 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.85■□□□□ 0.93
EXOSC3Q9NQT5 AC021242.3-201ENST00000607598 1377 ntBASIC20.85■□□□□ 0.93
EXOSC3Q9NQT5 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
EXOSC3Q9NQT5 BX664725.1-201ENST00000438252 379 ntBASIC20.85■□□□□ 0.93
EXOSC3Q9NQT5 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.85■□□□□ 0.93
EXOSC3Q9NQT5 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.85■□□□□ 0.93
EXOSC3Q9NQT5 SNX5-217ENST00000606557 1087 ntBASIC20.85■□□□□ 0.93
EXOSC3Q9NQT5 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.85■□□□□ 0.93
EXOSC3Q9NQT5 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
EXOSC3Q9NQT5 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
EXOSC3Q9NQT5 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
EXOSC3Q9NQT5 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.84■□□□□ 0.93
EXOSC3Q9NQT5 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.84■□□□□ 0.93
EXOSC3Q9NQT5 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
EXOSC3Q9NQT5 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
EXOSC3Q9NQT5 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
EXOSC3Q9NQT5 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
EXOSC3Q9NQT5 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
EXOSC3Q9NQT5 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
EXOSC3Q9NQT5 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
EXOSC3Q9NQT5 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
EXOSC3Q9NQT5 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
EXOSC3Q9NQT5 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.84■□□□□ 0.93
EXOSC3Q9NQT5 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
EXOSC3Q9NQT5 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
EXOSC3Q9NQT5 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
EXOSC3Q9NQT5 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
EXOSC3Q9NQT5 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.83■□□□□ 0.93
EXOSC3Q9NQT5 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.83■□□□□ 0.93
EXOSC3Q9NQT5 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
EXOSC3Q9NQT5 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.83■□□□□ 0.93
EXOSC3Q9NQT5 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms