Protein–RNA interactions for Protein: Q96EY7

PTCD3, Pentatricopeptide repeat domain-containing protein 3, mitochondrial, humanhuman

Known RBP Predictions only

Length 689 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3Q96EY7 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PTCD3Q96EY7 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC22.68■■□□□ 1.22
PTCD3Q96EY7 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC22.68■■□□□ 1.22
PTCD3Q96EY7 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PTCD3Q96EY7 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PTCD3Q96EY7 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PTCD3Q96EY7 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
PTCD3Q96EY7 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
PTCD3Q96EY7 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PTCD3Q96EY7 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
PTCD3Q96EY7 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
PTCD3Q96EY7 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
PTCD3Q96EY7 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC22.66■■□□□ 1.22
PTCD3Q96EY7 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PTCD3Q96EY7 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PTCD3Q96EY7 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
PTCD3Q96EY7 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC22.66■■□□□ 1.22
PTCD3Q96EY7 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
PTCD3Q96EY7 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC22.66■■□□□ 1.22
PTCD3Q96EY7 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC22.66■■□□□ 1.22
PTCD3Q96EY7 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
PTCD3Q96EY7 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PTCD3Q96EY7 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
PTCD3Q96EY7 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PTCD3Q96EY7 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PTCD3Q96EY7 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
PTCD3Q96EY7 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
PTCD3Q96EY7 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC22.65■■□□□ 1.22
PTCD3Q96EY7 HYI-210ENST00000486909 905 ntTSL 5 BASIC22.65■■□□□ 1.22
PTCD3Q96EY7 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
PTCD3Q96EY7 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PTCD3Q96EY7 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
PTCD3Q96EY7 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PTCD3Q96EY7 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
PTCD3Q96EY7 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
PTCD3Q96EY7 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
PTCD3Q96EY7 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.22
PTCD3Q96EY7 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC22.64■■□□□ 1.21
PTCD3Q96EY7 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
PTCD3Q96EY7 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PTCD3Q96EY7 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PTCD3Q96EY7 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC22.64■■□□□ 1.21
PTCD3Q96EY7 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
PTCD3Q96EY7 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PTCD3Q96EY7 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PTCD3Q96EY7 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
PTCD3Q96EY7 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
PTCD3Q96EY7 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC22.63■■□□□ 1.21
PTCD3Q96EY7 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC22.63■■□□□ 1.21
PTCD3Q96EY7 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PTCD3Q96EY7 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC22.63■■□□□ 1.21
PTCD3Q96EY7 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PTCD3Q96EY7 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC22.62■■□□□ 1.21
PTCD3Q96EY7 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC22.62■■□□□ 1.21
PTCD3Q96EY7 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
PTCD3Q96EY7 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
PTCD3Q96EY7 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
PTCD3Q96EY7 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
PTCD3Q96EY7 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
PTCD3Q96EY7 LONRF2P2-201ENST00000439212 571 ntBASIC22.62■■□□□ 1.21
PTCD3Q96EY7 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC22.62■■□□□ 1.21
PTCD3Q96EY7 DUX4L18-201ENST00000553347 1267 ntBASIC22.62■■□□□ 1.21
PTCD3Q96EY7 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PTCD3Q96EY7 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC22.62■■□□□ 1.21
PTCD3Q96EY7 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC22.62■■□□□ 1.21
PTCD3Q96EY7 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC22.62■■□□□ 1.21
PTCD3Q96EY7 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
PTCD3Q96EY7 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC22.61■■□□□ 1.21
PTCD3Q96EY7 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
PTCD3Q96EY7 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC22.61■■□□□ 1.21
PTCD3Q96EY7 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC22.61■■□□□ 1.21
PTCD3Q96EY7 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
PTCD3Q96EY7 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
PTCD3Q96EY7 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
PTCD3Q96EY7 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC22.61■■□□□ 1.21
PTCD3Q96EY7 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
PTCD3Q96EY7 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTCD3Q96EY7 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTCD3Q96EY7 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTCD3Q96EY7 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTCD3Q96EY7 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTCD3Q96EY7 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTCD3Q96EY7 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTCD3Q96EY7 AL592295.1-201ENST00000400984 884 ntBASIC22.6■■□□□ 1.21
PTCD3Q96EY7 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTCD3Q96EY7 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTCD3Q96EY7 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC22.6■■□□□ 1.21
PTCD3Q96EY7 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
PTCD3Q96EY7 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTCD3Q96EY7 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTCD3Q96EY7 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC22.59■■□□□ 1.21
PTCD3Q96EY7 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
PTCD3Q96EY7 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
PTCD3Q96EY7 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
PTCD3Q96EY7 HLA-L-211ENST00000482052 1765 ntBASIC22.59■■□□□ 1.21
PTCD3Q96EY7 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
PTCD3Q96EY7 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC22.59■■□□□ 1.21
PTCD3Q96EY7 AC004987.1-201ENST00000428627 508 ntBASIC22.59■■□□□ 1.21
PTCD3Q96EY7 ATP5G2P3-201ENST00000429083 425 ntBASIC22.59■■□□□ 1.21
PTCD3Q96EY7 AC139795.1-202ENST00000500444 432 ntBASIC22.59■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms