Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CPNE4Q96A23 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CPNE4Q96A23 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.53■□□□□ 0.88
CPNE4Q96A23 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CPNE4Q96A23 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CPNE4Q96A23 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CPNE4Q96A23 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CPNE4Q96A23 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CPNE4Q96A23 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CPNE4Q96A23 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CPNE4Q96A23 AL139125.2-201ENST00000623134 1869 ntBASIC20.52■□□□□ 0.88
CPNE4Q96A23 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
CPNE4Q96A23 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CPNE4Q96A23 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.52■□□□□ 0.88
CPNE4Q96A23 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.52■□□□□ 0.88
CPNE4Q96A23 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CPNE4Q96A23 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.87
CPNE4Q96A23 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.51■□□□□ 0.87
CPNE4Q96A23 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CPNE4Q96A23 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.51■□□□□ 0.87
CPNE4Q96A23 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CPNE4Q96A23 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.51■□□□□ 0.87
CPNE4Q96A23 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CPNE4Q96A23 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.51■□□□□ 0.87
CPNE4Q96A23 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CPNE4Q96A23 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.51■□□□□ 0.87
CPNE4Q96A23 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.51■□□□□ 0.87
CPNE4Q96A23 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CPNE4Q96A23 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.51■□□□□ 0.87
CPNE4Q96A23 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CPNE4Q96A23 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CPNE4Q96A23 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CPNE4Q96A23 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.5■□□□□ 0.87
CPNE4Q96A23 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CPNE4Q96A23 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.5■□□□□ 0.87
CPNE4Q96A23 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CPNE4Q96A23 LINC01124-201ENST00000409786 2117 ntBASIC20.5■□□□□ 0.87
CPNE4Q96A23 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CPNE4Q96A23 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CPNE4Q96A23 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.49■□□□□ 0.87
CPNE4Q96A23 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.49■□□□□ 0.87
CPNE4Q96A23 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CPNE4Q96A23 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CPNE4Q96A23 LINC00543-201ENST00000567234 1845 ntBASIC20.49■□□□□ 0.87
CPNE4Q96A23 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CPNE4Q96A23 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CPNE4Q96A23 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CPNE4Q96A23 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.49■□□□□ 0.87
CPNE4Q96A23 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.49■□□□□ 0.87
CPNE4Q96A23 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CPNE4Q96A23 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CPNE4Q96A23 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CPNE4Q96A23 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CPNE4Q96A23 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CPNE4Q96A23 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CPNE4Q96A23 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CPNE4Q96A23 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CPNE4Q96A23 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CPNE4Q96A23 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.48■□□□□ 0.87
CPNE4Q96A23 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CPNE4Q96A23 AC005703.6-201ENST00000623265 1329 ntBASIC20.48■□□□□ 0.87
CPNE4Q96A23 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CPNE4Q96A23 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.47■□□□□ 0.87
CPNE4Q96A23 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.47■□□□□ 0.87
CPNE4Q96A23 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.47■□□□□ 0.87
CPNE4Q96A23 AC131212.1-201ENST00000613771 668 ntBASIC20.47■□□□□ 0.87
CPNE4Q96A23 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CPNE4Q96A23 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CPNE4Q96A23 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.46■□□□□ 0.87
CPNE4Q96A23 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CPNE4Q96A23 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.46■□□□□ 0.87
CPNE4Q96A23 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CPNE4Q96A23 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CPNE4Q96A23 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CPNE4Q96A23 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CPNE4Q96A23 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.46■□□□□ 0.87
CPNE4Q96A23 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.46■□□□□ 0.87
CPNE4Q96A23 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CPNE4Q96A23 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.46■□□□□ 0.87
CPNE4Q96A23 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CPNE4Q96A23 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CPNE4Q96A23 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
CPNE4Q96A23 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.46■□□□□ 0.87
CPNE4Q96A23 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CPNE4Q96A23 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.87
CPNE4Q96A23 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.45■□□□□ 0.86
CPNE4Q96A23 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPNE4Q96A23 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CPNE4Q96A23 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.45■□□□□ 0.86
CPNE4Q96A23 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CPNE4Q96A23 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPNE4Q96A23 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CPNE4Q96A23 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.45■□□□□ 0.86
CPNE4Q96A23 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CPNE4Q96A23 ALDH1A3-203ENST00000557963 1670 ntBASIC20.45■□□□□ 0.86
CPNE4Q96A23 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.44■□□□□ 0.86
CPNE4Q96A23 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CPNE4Q96A23 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CPNE4Q96A23 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.44■□□□□ 0.86
CPNE4Q96A23 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms