Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
BEST3Q8N1M1 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
BEST3Q8N1M1 MIR638-201ENST00000385237 100 ntBASIC21.19■□□□□ 0.98
BEST3Q8N1M1 AC096631.2-201ENST00000436136 790 ntBASIC21.19■□□□□ 0.98
BEST3Q8N1M1 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
BEST3Q8N1M1 AC005703.6-201ENST00000623265 1329 ntBASIC21.19■□□□□ 0.98
BEST3Q8N1M1 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
BEST3Q8N1M1 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
BEST3Q8N1M1 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
BEST3Q8N1M1 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
BEST3Q8N1M1 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
BEST3Q8N1M1 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.18■□□□□ 0.98
BEST3Q8N1M1 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.18■□□□□ 0.98
BEST3Q8N1M1 AC110285.6-201ENST00000617652 491 ntBASIC21.18■□□□□ 0.98
BEST3Q8N1M1 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
BEST3Q8N1M1 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
BEST3Q8N1M1 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
BEST3Q8N1M1 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
BEST3Q8N1M1 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.17■□□□□ 0.98
BEST3Q8N1M1 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
BEST3Q8N1M1 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.17■□□□□ 0.98
BEST3Q8N1M1 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.17■□□□□ 0.98
BEST3Q8N1M1 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
BEST3Q8N1M1 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
BEST3Q8N1M1 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
BEST3Q8N1M1 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
BEST3Q8N1M1 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.17■□□□□ 0.98
BEST3Q8N1M1 AL022069.1-201ENST00000568025 1636 ntBASIC21.17■□□□□ 0.98
BEST3Q8N1M1 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.17■□□□□ 0.98
BEST3Q8N1M1 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
BEST3Q8N1M1 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
BEST3Q8N1M1 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.17■□□□□ 0.98
BEST3Q8N1M1 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.17■□□□□ 0.98
BEST3Q8N1M1 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
BEST3Q8N1M1 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
BEST3Q8N1M1 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
BEST3Q8N1M1 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.16■□□□□ 0.98
BEST3Q8N1M1 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.16■□□□□ 0.98
BEST3Q8N1M1 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.15■□□□□ 0.98
BEST3Q8N1M1 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BEST3Q8N1M1 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BEST3Q8N1M1 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.15■□□□□ 0.98
BEST3Q8N1M1 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
BEST3Q8N1M1 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BEST3Q8N1M1 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.15■□□□□ 0.98
BEST3Q8N1M1 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BEST3Q8N1M1 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BEST3Q8N1M1 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BEST3Q8N1M1 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.98
BEST3Q8N1M1 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
BEST3Q8N1M1 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
BEST3Q8N1M1 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
BEST3Q8N1M1 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.14■□□□□ 0.97
BEST3Q8N1M1 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.14■□□□□ 0.97
BEST3Q8N1M1 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
BEST3Q8N1M1 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.14■□□□□ 0.97
BEST3Q8N1M1 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
BEST3Q8N1M1 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
BEST3Q8N1M1 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
BEST3Q8N1M1 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
BEST3Q8N1M1 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BEST3Q8N1M1 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
BEST3Q8N1M1 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
BEST3Q8N1M1 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
BEST3Q8N1M1 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.13■□□□□ 0.97
BEST3Q8N1M1 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BEST3Q8N1M1 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
BEST3Q8N1M1 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
BEST3Q8N1M1 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
BEST3Q8N1M1 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.12■□□□□ 0.97
BEST3Q8N1M1 SRD5A1P1-201ENST00000442297 786 ntBASIC21.12■□□□□ 0.97
BEST3Q8N1M1 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.12■□□□□ 0.97
BEST3Q8N1M1 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.12■□□□□ 0.97
BEST3Q8N1M1 AC093323.1-202ENST00000635031 2045 ntBASIC21.12■□□□□ 0.97
BEST3Q8N1M1 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
BEST3Q8N1M1 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
BEST3Q8N1M1 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
BEST3Q8N1M1 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BEST3Q8N1M1 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
BEST3Q8N1M1 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BEST3Q8N1M1 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BEST3Q8N1M1 HLA-L-211ENST00000482052 1765 ntBASIC21.11■□□□□ 0.97
BEST3Q8N1M1 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BEST3Q8N1M1 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BEST3Q8N1M1 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
BEST3Q8N1M1 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BEST3Q8N1M1 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BEST3Q8N1M1 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BEST3Q8N1M1 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BEST3Q8N1M1 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
BEST3Q8N1M1 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
BEST3Q8N1M1 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
BEST3Q8N1M1 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.1■□□□□ 0.97
BEST3Q8N1M1 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
BEST3Q8N1M1 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
BEST3Q8N1M1 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
BEST3Q8N1M1 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BEST3Q8N1M1 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.1■□□□□ 0.97
BEST3Q8N1M1 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
BEST3Q8N1M1 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms