Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CCDC65Q8IXS2 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC25.38■■□□□ 1.65
CCDC65Q8IXS2 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC25.38■■□□□ 1.65
CCDC65Q8IXS2 TK2-202ENST00000417693 1046 ntTSL 2 BASIC25.38■■□□□ 1.65
CCDC65Q8IXS2 BX664725.1-201ENST00000438252 379 ntBASIC25.38■■□□□ 1.65
CCDC65Q8IXS2 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC25.38■■□□□ 1.65
CCDC65Q8IXS2 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC25.38■■□□□ 1.65
CCDC65Q8IXS2 LSM7-203ENST00000585409 512 ntTSL 2 BASIC25.38■■□□□ 1.65
CCDC65Q8IXS2 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC25.38■■□□□ 1.65
CCDC65Q8IXS2 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC25.38■■□□□ 1.65
CCDC65Q8IXS2 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC25.38■■□□□ 1.65
CCDC65Q8IXS2 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC25.38■■□□□ 1.65
CCDC65Q8IXS2 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CCDC65Q8IXS2 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
CCDC65Q8IXS2 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
CCDC65Q8IXS2 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
CCDC65Q8IXS2 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
CCDC65Q8IXS2 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC25.37■■□□□ 1.65
CCDC65Q8IXS2 ALDH1A3-203ENST00000557963 1670 ntBASIC25.37■■□□□ 1.65
CCDC65Q8IXS2 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC25.37■■□□□ 1.65
CCDC65Q8IXS2 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CCDC65Q8IXS2 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
CCDC65Q8IXS2 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC25.37■■□□□ 1.65
CCDC65Q8IXS2 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
CCDC65Q8IXS2 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CCDC65Q8IXS2 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC25.36■■□□□ 1.65
CCDC65Q8IXS2 RNF146-205ENST00000477776 762 ntTSL 3 BASIC25.36■■□□□ 1.65
CCDC65Q8IXS2 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
CCDC65Q8IXS2 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
CCDC65Q8IXS2 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CCDC65Q8IXS2 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CCDC65Q8IXS2 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC25.35■■□□□ 1.65
CCDC65Q8IXS2 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC25.35■■□□□ 1.65
CCDC65Q8IXS2 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC65Q8IXS2 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC65Q8IXS2 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC65Q8IXS2 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
CCDC65Q8IXS2 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC65Q8IXS2 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC65Q8IXS2 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC25.34■■□□□ 1.65
CCDC65Q8IXS2 EI24-204ENST00000527235 1625 ntTSL 5 BASIC25.34■■□□□ 1.65
CCDC65Q8IXS2 AC021242.3-201ENST00000607598 1377 ntBASIC25.34■■□□□ 1.65
CCDC65Q8IXS2 SENP5-202ENST00000419026 973 ntTSL 3 BASIC25.34■■□□□ 1.65
CCDC65Q8IXS2 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC25.34■■□□□ 1.65
CCDC65Q8IXS2 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
CCDC65Q8IXS2 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC25.34■■□□□ 1.65
CCDC65Q8IXS2 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC65Q8IXS2 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
CCDC65Q8IXS2 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC25.33■■□□□ 1.65
CCDC65Q8IXS2 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
CCDC65Q8IXS2 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC25.33■■□□□ 1.65
CCDC65Q8IXS2 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
CCDC65Q8IXS2 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
CCDC65Q8IXS2 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
CCDC65Q8IXS2 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
CCDC65Q8IXS2 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC25.33■■□□□ 1.65
CCDC65Q8IXS2 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC25.33■■□□□ 1.65
CCDC65Q8IXS2 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC25.33■■□□□ 1.65
CCDC65Q8IXS2 SNX5-217ENST00000606557 1087 ntBASIC25.33■■□□□ 1.65
CCDC65Q8IXS2 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC25.33■■□□□ 1.65
CCDC65Q8IXS2 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
CCDC65Q8IXS2 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC25.33■■□□□ 1.65
CCDC65Q8IXS2 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC25.33■■□□□ 1.65
CCDC65Q8IXS2 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
CCDC65Q8IXS2 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
CCDC65Q8IXS2 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC25.32■■□□□ 1.64
CCDC65Q8IXS2 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC25.32■■□□□ 1.64
CCDC65Q8IXS2 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC65Q8IXS2 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC65Q8IXS2 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC65Q8IXS2 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC65Q8IXS2 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
CCDC65Q8IXS2 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC65Q8IXS2 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC65Q8IXS2 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
CCDC65Q8IXS2 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CCDC65Q8IXS2 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
CCDC65Q8IXS2 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC25.31■■□□□ 1.64
CCDC65Q8IXS2 Z92544.1-202ENST00000571933 1220 ntBASIC25.31■■□□□ 1.64
CCDC65Q8IXS2 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC25.31■■□□□ 1.64
CCDC65Q8IXS2 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CCDC65Q8IXS2 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CCDC65Q8IXS2 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC25.31■■□□□ 1.64
CCDC65Q8IXS2 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
CCDC65Q8IXS2 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CCDC65Q8IXS2 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC25.3■■□□□ 1.64
CCDC65Q8IXS2 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC25.3■■□□□ 1.64
CCDC65Q8IXS2 AL451085.2-201ENST00000605085 799 ntBASIC25.3■■□□□ 1.64
CCDC65Q8IXS2 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
CCDC65Q8IXS2 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC25.3■■□□□ 1.64
CCDC65Q8IXS2 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
CCDC65Q8IXS2 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC25.29■■□□□ 1.64
CCDC65Q8IXS2 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC65Q8IXS2 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC65Q8IXS2 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC65Q8IXS2 AC009299.2-201ENST00000482477 511 ntBASIC25.29■■□□□ 1.64
CCDC65Q8IXS2 KRT125P-201ENST00000546827 989 ntBASIC25.29■■□□□ 1.64
CCDC65Q8IXS2 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC25.29■■□□□ 1.64
CCDC65Q8IXS2 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC25.29■■□□□ 1.64
CCDC65Q8IXS2 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC25.29■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms