Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC40Q4G0X9 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC40Q4G0X9 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC40Q4G0X9 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC40Q4G0X9 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
CCDC40Q4G0X9 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CCDC40Q4G0X9 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
CCDC40Q4G0X9 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC25.11■■□□□ 1.61
CCDC40Q4G0X9 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC25.11■■□□□ 1.61
CCDC40Q4G0X9 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
CCDC40Q4G0X9 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CCDC40Q4G0X9 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC25.1■■□□□ 1.61
CCDC40Q4G0X9 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC25.1■■□□□ 1.61
CCDC40Q4G0X9 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CCDC40Q4G0X9 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CCDC40Q4G0X9 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CCDC40Q4G0X9 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CCDC40Q4G0X9 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CCDC40Q4G0X9 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CCDC40Q4G0X9 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CCDC40Q4G0X9 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CCDC40Q4G0X9 KRT18P24-201ENST00000344739 1156 ntBASIC25.09■■□□□ 1.61
CCDC40Q4G0X9 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CCDC40Q4G0X9 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC25.09■■□□□ 1.61
CCDC40Q4G0X9 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC25.09■■□□□ 1.61
CCDC40Q4G0X9 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
CCDC40Q4G0X9 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC25.09■■□□□ 1.61
CCDC40Q4G0X9 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC40Q4G0X9 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC25.08■■□□□ 1.61
CCDC40Q4G0X9 AC131274.2-201ENST00000580697 1507 ntBASIC25.08■■□□□ 1.61
CCDC40Q4G0X9 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC25.08■■□□□ 1.61
CCDC40Q4G0X9 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC40Q4G0X9 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC25.08■■□□□ 1.61
CCDC40Q4G0X9 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC25.08■■□□□ 1.61
CCDC40Q4G0X9 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
CCDC40Q4G0X9 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
CCDC40Q4G0X9 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
CCDC40Q4G0X9 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
CCDC40Q4G0X9 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CCDC40Q4G0X9 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC25.07■■□□□ 1.6
CCDC40Q4G0X9 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC25.07■■□□□ 1.6
CCDC40Q4G0X9 STK32C-205ENST00000456004 607 ntTSL 2 BASIC25.07■■□□□ 1.6
CCDC40Q4G0X9 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC25.07■■□□□ 1.6
CCDC40Q4G0X9 MIR4281-201ENST00000580852 62 ntBASIC25.07■■□□□ 1.6
CCDC40Q4G0X9 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
CCDC40Q4G0X9 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC25.06■■□□□ 1.6
CCDC40Q4G0X9 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CCDC40Q4G0X9 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
CCDC40Q4G0X9 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
CCDC40Q4G0X9 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CCDC40Q4G0X9 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC25.06■■□□□ 1.6
CCDC40Q4G0X9 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
CCDC40Q4G0X9 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
CCDC40Q4G0X9 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CCDC40Q4G0X9 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
CCDC40Q4G0X9 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
CCDC40Q4G0X9 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CCDC40Q4G0X9 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC25.05■■□□□ 1.6
CCDC40Q4G0X9 EI24-213ENST00000618552 1747 ntTSL 5 BASIC25.05■■□□□ 1.6
CCDC40Q4G0X9 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CCDC40Q4G0X9 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
CCDC40Q4G0X9 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
CCDC40Q4G0X9 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC40Q4G0X9 KRT8P33-201ENST00000508125 1423 ntBASIC25.04■■□□□ 1.6
CCDC40Q4G0X9 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC25.04■■□□□ 1.6
CCDC40Q4G0X9 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC25.04■■□□□ 1.6
CCDC40Q4G0X9 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC25.04■■□□□ 1.6
CCDC40Q4G0X9 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC25.04■■□□□ 1.6
CCDC40Q4G0X9 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC40Q4G0X9 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC25.04■■□□□ 1.6
CCDC40Q4G0X9 MIR4508-201ENST00000584178 70 ntBASIC25.04■■□□□ 1.6
CCDC40Q4G0X9 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC25.04■■□□□ 1.6
CCDC40Q4G0X9 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC40Q4G0X9 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC40Q4G0X9 DUSP8P5-201ENST00000422884 1815 ntBASIC25.04■■□□□ 1.6
CCDC40Q4G0X9 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC25.04■■□□□ 1.6
CCDC40Q4G0X9 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC40Q4G0X9 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC25.03■■□□□ 1.6
CCDC40Q4G0X9 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC25.03■■□□□ 1.6
CCDC40Q4G0X9 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CCDC40Q4G0X9 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
CCDC40Q4G0X9 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC25.03■■□□□ 1.6
CCDC40Q4G0X9 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CCDC40Q4G0X9 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CCDC40Q4G0X9 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC25.02■■□□□ 1.6
CCDC40Q4G0X9 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC40Q4G0X9 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC40Q4G0X9 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC40Q4G0X9 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC40Q4G0X9 LBH-205ENST00000407930 756 ntTSL 2 BASIC25.02■■□□□ 1.6
CCDC40Q4G0X9 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC40Q4G0X9 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC40Q4G0X9 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC40Q4G0X9 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC40Q4G0X9 AF131216.4-201ENST00000638924 1588 ntBASIC25.01■■□□□ 1.59
CCDC40Q4G0X9 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC25.01■■□□□ 1.59
CCDC40Q4G0X9 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC40Q4G0X9 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
CCDC40Q4G0X9 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC25.01■■□□□ 1.59
CCDC40Q4G0X9 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC25.01■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms