Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
PTCHD3Q3KNS1 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PTCHD3Q3KNS1 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC22.34■■□□□ 1.17
PTCHD3Q3KNS1 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
PTCHD3Q3KNS1 AF131216.4-201ENST00000638924 1588 ntBASIC22.34■■□□□ 1.17
PTCHD3Q3KNS1 AL161729.1-201ENST00000604104 1402 ntBASIC22.34■■□□□ 1.17
PTCHD3Q3KNS1 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
PTCHD3Q3KNS1 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC22.34■■□□□ 1.17
PTCHD3Q3KNS1 GRAMD4P7-201ENST00000578182 1232 ntBASIC22.34■■□□□ 1.17
PTCHD3Q3KNS1 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
PTCHD3Q3KNS1 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
PTCHD3Q3KNS1 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC22.34■■□□□ 1.17
PTCHD3Q3KNS1 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC22.34■■□□□ 1.17
PTCHD3Q3KNS1 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
PTCHD3Q3KNS1 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
PTCHD3Q3KNS1 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC22.33■■□□□ 1.17
PTCHD3Q3KNS1 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
PTCHD3Q3KNS1 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
PTCHD3Q3KNS1 AC131274.2-201ENST00000580697 1507 ntBASIC22.33■■□□□ 1.17
PTCHD3Q3KNS1 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
PTCHD3Q3KNS1 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC22.33■■□□□ 1.17
PTCHD3Q3KNS1 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
PTCHD3Q3KNS1 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC22.33■■□□□ 1.17
PTCHD3Q3KNS1 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC22.33■■□□□ 1.17
PTCHD3Q3KNS1 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC22.33■■□□□ 1.17
PTCHD3Q3KNS1 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC22.33■■□□□ 1.17
PTCHD3Q3KNS1 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
PTCHD3Q3KNS1 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
PTCHD3Q3KNS1 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PTCHD3Q3KNS1 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
PTCHD3Q3KNS1 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
PTCHD3Q3KNS1 TSPY9P-201ENST00000440215 945 ntBASIC22.32■■□□□ 1.16
PTCHD3Q3KNS1 TSPY11P-201ENST00000442607 1045 ntBASIC22.32■■□□□ 1.16
PTCHD3Q3KNS1 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC22.32■■□□□ 1.16
PTCHD3Q3KNS1 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
PTCHD3Q3KNS1 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
PTCHD3Q3KNS1 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC22.32■■□□□ 1.16
PTCHD3Q3KNS1 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PTCHD3Q3KNS1 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PTCHD3Q3KNS1 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC22.31■■□□□ 1.16
PTCHD3Q3KNS1 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PTCHD3Q3KNS1 AC021242.3-201ENST00000607598 1377 ntBASIC22.31■■□□□ 1.16
PTCHD3Q3KNS1 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
PTCHD3Q3KNS1 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC22.31■■□□□ 1.16
PTCHD3Q3KNS1 LBH-205ENST00000407930 756 ntTSL 2 BASIC22.31■■□□□ 1.16
PTCHD3Q3KNS1 UNC93B8-201ENST00000511903 705 ntBASIC22.31■■□□□ 1.16
PTCHD3Q3KNS1 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC22.31■■□□□ 1.16
PTCHD3Q3KNS1 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PTCHD3Q3KNS1 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PTCHD3Q3KNS1 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
PTCHD3Q3KNS1 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PTCHD3Q3KNS1 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
PTCHD3Q3KNS1 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
PTCHD3Q3KNS1 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC22.3■■□□□ 1.16
PTCHD3Q3KNS1 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PTCHD3Q3KNS1 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC22.3■■□□□ 1.16
PTCHD3Q3KNS1 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
PTCHD3Q3KNS1 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
PTCHD3Q3KNS1 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
PTCHD3Q3KNS1 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PTCHD3Q3KNS1 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC22.29■■□□□ 1.16
PTCHD3Q3KNS1 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PTCHD3Q3KNS1 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
PTCHD3Q3KNS1 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PTCHD3Q3KNS1 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
PTCHD3Q3KNS1 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
PTCHD3Q3KNS1 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
PTCHD3Q3KNS1 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC22.29■■□□□ 1.16
PTCHD3Q3KNS1 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PTCHD3Q3KNS1 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
PTCHD3Q3KNS1 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
PTCHD3Q3KNS1 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
PTCHD3Q3KNS1 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
PTCHD3Q3KNS1 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PTCHD3Q3KNS1 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PTCHD3Q3KNS1 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PTCHD3Q3KNS1 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PTCHD3Q3KNS1 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
PTCHD3Q3KNS1 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC22.28■■□□□ 1.16
PTCHD3Q3KNS1 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
PTCHD3Q3KNS1 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PTCHD3Q3KNS1 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
PTCHD3Q3KNS1 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
PTCHD3Q3KNS1 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC22.27■■□□□ 1.16
PTCHD3Q3KNS1 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PTCHD3Q3KNS1 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC22.27■■□□□ 1.16
PTCHD3Q3KNS1 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC22.27■■□□□ 1.16
PTCHD3Q3KNS1 KRT16P3-201ENST00000439127 1283 ntBASIC22.27■■□□□ 1.16
PTCHD3Q3KNS1 STK32C-205ENST00000456004 607 ntTSL 2 BASIC22.27■■□□□ 1.16
PTCHD3Q3KNS1 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC22.27■■□□□ 1.16
PTCHD3Q3KNS1 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PTCHD3Q3KNS1 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
PTCHD3Q3KNS1 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PTCHD3Q3KNS1 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC22.27■■□□□ 1.16
PTCHD3Q3KNS1 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC22.26■■□□□ 1.15
PTCHD3Q3KNS1 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC22.26■■□□□ 1.15
PTCHD3Q3KNS1 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
PTCHD3Q3KNS1 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC22.26■■□□□ 1.15
PTCHD3Q3KNS1 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC22.26■■□□□ 1.15
PTCHD3Q3KNS1 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC22.26■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms