Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.38■□□□□ 0.85
CLRN1P58418 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLRN1P58418 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.38■□□□□ 0.85
CLRN1P58418 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLRN1P58418 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLRN1P58418 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLRN1P58418 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLRN1P58418 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLRN1P58418 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CLRN1P58418 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLRN1P58418 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.37■□□□□ 0.85
CLRN1P58418 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.37■□□□□ 0.85
CLRN1P58418 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.37■□□□□ 0.85
CLRN1P58418 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLRN1P58418 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLRN1P58418 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLRN1P58418 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CLRN1P58418 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.37■□□□□ 0.85
CLRN1P58418 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLRN1P58418 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CLRN1P58418 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLRN1P58418 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLRN1P58418 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLRN1P58418 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CLRN1P58418 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLRN1P58418 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CLRN1P58418 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLRN1P58418 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLRN1P58418 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.35■□□□□ 0.85
CLRN1P58418 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLRN1P58418 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CLRN1P58418 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLRN1P58418 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.34■□□□□ 0.85
CLRN1P58418 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLRN1P58418 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLRN1P58418 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLRN1P58418 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CLRN1P58418 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CLRN1P58418 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLRN1P58418 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.34■□□□□ 0.85
CLRN1P58418 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.34■□□□□ 0.85
CLRN1P58418 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CLRN1P58418 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLRN1P58418 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLRN1P58418 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLRN1P58418 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CLRN1P58418 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CLRN1P58418 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.33■□□□□ 0.85
CLRN1P58418 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CLRN1P58418 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.33■□□□□ 0.84
CLRN1P58418 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
CLRN1P58418 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CLRN1P58418 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CLRN1P58418 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.33■□□□□ 0.84
CLRN1P58418 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
CLRN1P58418 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CLRN1P58418 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CLRN1P58418 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLRN1P58418 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CLRN1P58418 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.32■□□□□ 0.84
CLRN1P58418 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CLRN1P58418 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLRN1P58418 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CLRN1P58418 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CLRN1P58418 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLRN1P58418 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLRN1P58418 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLRN1P58418 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLRN1P58418 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.31■□□□□ 0.84
CLRN1P58418 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CLRN1P58418 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLRN1P58418 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.31■□□□□ 0.84
CLRN1P58418 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.31■□□□□ 0.84
CLRN1P58418 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
CLRN1P58418 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLRN1P58418 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLRN1P58418 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.3■□□□□ 0.84
CLRN1P58418 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.3■□□□□ 0.84
CLRN1P58418 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLRN1P58418 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.3■□□□□ 0.84
CLRN1P58418 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLRN1P58418 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLRN1P58418 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLRN1P58418 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLRN1P58418 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLRN1P58418 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.3■□□□□ 0.84
CLRN1P58418 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLRN1P58418 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLRN1P58418 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLRN1P58418 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CLRN1P58418 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
CLRN1P58418 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
CLRN1P58418 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLRN1P58418 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.29■□□□□ 0.84
CLRN1P58418 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.29■□□□□ 0.84
CLRN1P58418 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
CLRN1P58418 AC137630.3-201ENST00000607245 391 ntBASIC20.29■□□□□ 0.84
CLRN1P58418 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CLRN1P58418 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLRN1P58418 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms