Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
HNF4AP41235 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HNF4AP41235 AC131274.2-201ENST00000580697 1507 ntBASIC22.12■■□□□ 1.13
HNF4AP41235 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
HNF4AP41235 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC22.12■■□□□ 1.13
HNF4AP41235 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HNF4AP41235 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC22.12■■□□□ 1.13
HNF4AP41235 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HNF4AP41235 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HNF4AP41235 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
HNF4AP41235 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
HNF4AP41235 RARA-203ENST00000394086 2008 ntTSL 2 BASIC22.11■■□□□ 1.13
HNF4AP41235 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
HNF4AP41235 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HNF4AP41235 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC22.11■■□□□ 1.13
HNF4AP41235 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC22.11■■□□□ 1.13
HNF4AP41235 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC22.11■■□□□ 1.13
HNF4AP41235 AL451085.2-201ENST00000605085 799 ntBASIC22.11■■□□□ 1.13
HNF4AP41235 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC22.11■■□□□ 1.13
HNF4AP41235 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HNF4AP41235 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22.11■■□□□ 1.13
HNF4AP41235 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HNF4AP41235 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HNF4AP41235 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
HNF4AP41235 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC22.1■■□□□ 1.13
HNF4AP41235 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
HNF4AP41235 PRTG-204ENST00000561292 833 ntTSL 3 BASIC22.1■■□□□ 1.13
HNF4AP41235 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
HNF4AP41235 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
HNF4AP41235 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
HNF4AP41235 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC22.1■■□□□ 1.13
HNF4AP41235 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC22.1■■□□□ 1.13
HNF4AP41235 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
HNF4AP41235 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HNF4AP41235 AF131216.4-201ENST00000638924 1588 ntBASIC22.09■■□□□ 1.13
HNF4AP41235 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC22.09■■□□□ 1.13
HNF4AP41235 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC22.09■■□□□ 1.13
HNF4AP41235 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
HNF4AP41235 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HNF4AP41235 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
HNF4AP41235 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HNF4AP41235 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
HNF4AP41235 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HNF4AP41235 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HNF4AP41235 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HNF4AP41235 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC22.09■■□□□ 1.13
HNF4AP41235 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HNF4AP41235 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HNF4AP41235 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HNF4AP41235 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
HNF4AP41235 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HNF4AP41235 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HNF4AP41235 RNF146-205ENST00000477776 762 ntTSL 3 BASIC22.08■■□□□ 1.13
HNF4AP41235 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HNF4AP41235 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC22.08■■□□□ 1.13
HNF4AP41235 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC22.08■■□□□ 1.13
HNF4AP41235 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC22.08■■□□□ 1.13
HNF4AP41235 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.08■■□□□ 1.12
HNF4AP41235 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC22.08■■□□□ 1.12
HNF4AP41235 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
HNF4AP41235 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC22.08■■□□□ 1.12
HNF4AP41235 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC22.07■■□□□ 1.12
HNF4AP41235 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
HNF4AP41235 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC22.07■■□□□ 1.12
HNF4AP41235 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC22.07■■□□□ 1.12
HNF4AP41235 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
HNF4AP41235 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC22.07■■□□□ 1.12
HNF4AP41235 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
HNF4AP41235 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
HNF4AP41235 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
HNF4AP41235 EI24-213ENST00000618552 1747 ntTSL 5 BASIC22.06■■□□□ 1.12
HNF4AP41235 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC22.06■■□□□ 1.12
HNF4AP41235 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
HNF4AP41235 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC22.06■■□□□ 1.12
HNF4AP41235 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC22.05■■□□□ 1.12
HNF4AP41235 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
HNF4AP41235 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
HNF4AP41235 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC22.05■■□□□ 1.12
HNF4AP41235 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
HNF4AP41235 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
HNF4AP41235 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
HNF4AP41235 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
HNF4AP41235 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
HNF4AP41235 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC22.05■■□□□ 1.12
HNF4AP41235 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
HNF4AP41235 AC009299.2-201ENST00000482477 511 ntBASIC22.05■■□□□ 1.12
HNF4AP41235 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
HNF4AP41235 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
HNF4AP41235 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
HNF4AP41235 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
HNF4AP41235 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
HNF4AP41235 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
HNF4AP41235 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
HNF4AP41235 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
HNF4AP41235 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
HNF4AP41235 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
HNF4AP41235 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
HNF4AP41235 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC22.04■■□□□ 1.12
HNF4AP41235 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC22.04■■□□□ 1.12
HNF4AP41235 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms