Protein–RNA interactions for Protein: P30531

SLC6A1, Sodium- and chloride-dependent GABA transporter 1, humanhuman

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A1P30531 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SLC6A1P30531 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SLC6A1P30531 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
SLC6A1P30531 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SLC6A1P30531 BRD4-212ENST00000630599 726 ntTSL 2 BASIC19.71■□□□□ 0.75
SLC6A1P30531 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SLC6A1P30531 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SLC6A1P30531 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SLC6A1P30531 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.71■□□□□ 0.75
SLC6A1P30531 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SLC6A1P30531 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SLC6A1P30531 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC19.7■□□□□ 0.74
SLC6A1P30531 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SLC6A1P30531 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.7■□□□□ 0.74
SLC6A1P30531 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SLC6A1P30531 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
SLC6A1P30531 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SLC6A1P30531 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SLC6A1P30531 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC19.7■□□□□ 0.74
SLC6A1P30531 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SLC6A1P30531 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SLC6A1P30531 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SLC6A1P30531 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SLC6A1P30531 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SLC6A1P30531 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SLC6A1P30531 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SLC6A1P30531 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC19.7■□□□□ 0.74
SLC6A1P30531 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SLC6A1P30531 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SLC6A1P30531 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SLC6A1P30531 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.69■□□□□ 0.74
SLC6A1P30531 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SLC6A1P30531 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC19.69■□□□□ 0.74
SLC6A1P30531 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SLC6A1P30531 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SLC6A1P30531 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SLC6A1P30531 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
SLC6A1P30531 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.68■□□□□ 0.74
SLC6A1P30531 AC092068.2-201ENST00000590491 1708 ntBASIC19.68■□□□□ 0.74
SLC6A1P30531 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SLC6A1P30531 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SLC6A1P30531 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SLC6A1P30531 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SLC6A1P30531 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.68■□□□□ 0.74
SLC6A1P30531 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SLC6A1P30531 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SLC6A1P30531 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.67■□□□□ 0.74
SLC6A1P30531 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.67■□□□□ 0.74
SLC6A1P30531 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SLC6A1P30531 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SLC6A1P30531 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SLC6A1P30531 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SLC6A1P30531 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SLC6A1P30531 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SLC6A1P30531 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SLC6A1P30531 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SLC6A1P30531 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SLC6A1P30531 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
SLC6A1P30531 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SLC6A1P30531 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SLC6A1P30531 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SLC6A1P30531 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SLC6A1P30531 CHST11-203ENST00000547956 936 ntTSL 2 BASIC19.66■□□□□ 0.74
SLC6A1P30531 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
SLC6A1P30531 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SLC6A1P30531 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SLC6A1P30531 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SLC6A1P30531 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SLC6A1P30531 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC19.66■□□□□ 0.74
SLC6A1P30531 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC6A1P30531 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.65■□□□□ 0.74
SLC6A1P30531 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC19.65■□□□□ 0.74
SLC6A1P30531 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SLC6A1P30531 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SLC6A1P30531 GPX1-201ENST00000419349 1106 ntBASIC19.65■□□□□ 0.74
SLC6A1P30531 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SLC6A1P30531 RNF126P1-201ENST00000567452 1320 ntBASIC19.65■□□□□ 0.74
SLC6A1P30531 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC6A1P30531 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.65■□□□□ 0.74
SLC6A1P30531 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC6A1P30531 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SLC6A1P30531 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC6A1P30531 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SLC6A1P30531 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.64■□□□□ 0.74
SLC6A1P30531 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SLC6A1P30531 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.64■□□□□ 0.73
SLC6A1P30531 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SLC6A1P30531 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SLC6A1P30531 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SLC6A1P30531 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.64■□□□□ 0.73
SLC6A1P30531 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SLC6A1P30531 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SLC6A1P30531 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.73
SLC6A1P30531 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SLC6A1P30531 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SLC6A1P30531 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SLC6A1P30531 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SLC6A1P30531 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SLC6A1P30531 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SLC6A1P30531 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms