Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
RAPGEF3O95398 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC35.02■■■■□ 3.2
RAPGEF3O95398 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC35.01■■■■□ 3.2
RAPGEF3O95398 ME3-201ENST00000323418 1068 ntTSL 5 BASIC35.01■■■■□ 3.2
RAPGEF3O95398 MIR6084-201ENST00000622012 110 ntBASIC35.01■■■■□ 3.2
RAPGEF3O95398 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC35.01■■■■□ 3.19
RAPGEF3O95398 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC35■■■■□ 3.19
RAPGEF3O95398 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC35■■■■□ 3.19
RAPGEF3O95398 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC35■■■■□ 3.19
RAPGEF3O95398 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC35■■■■□ 3.19
RAPGEF3O95398 CCDC92B-201ENST00000575506 885 ntBASIC35■■■■□ 3.19
RAPGEF3O95398 AC126544.1-201ENST00000580842 1059 ntBASIC35■■■■□ 3.19
RAPGEF3O95398 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC35■■■■□ 3.19
RAPGEF3O95398 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC35■■■■□ 3.19
RAPGEF3O95398 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC35■■■■□ 3.19
RAPGEF3O95398 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
RAPGEF3O95398 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC34.99■■■■□ 3.19
RAPGEF3O95398 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
RAPGEF3O95398 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC34.98■■■■□ 3.19
RAPGEF3O95398 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC34.98■■■■□ 3.19
RAPGEF3O95398 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC34.98■■■■□ 3.19
RAPGEF3O95398 NTF6G-201ENST00000591094 616 ntBASIC34.98■■■■□ 3.19
RAPGEF3O95398 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC34.98■■■■□ 3.19
RAPGEF3O95398 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC34.98■■■■□ 3.19
RAPGEF3O95398 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
RAPGEF3O95398 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC34.97■■■■□ 3.19
RAPGEF3O95398 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
RAPGEF3O95398 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
RAPGEF3O95398 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC34.97■■■■□ 3.19
RAPGEF3O95398 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC34.96■■■■□ 3.19
RAPGEF3O95398 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC34.96■■■■□ 3.19
RAPGEF3O95398 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC34.96■■■■□ 3.19
RAPGEF3O95398 AL358852.1-201ENST00000623174 1268 ntBASIC34.96■■■■□ 3.19
RAPGEF3O95398 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC34.96■■■■□ 3.19
RAPGEF3O95398 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC34.96■■■■□ 3.19
RAPGEF3O95398 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC34.96■■■■□ 3.19
RAPGEF3O95398 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.19
RAPGEF3O95398 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC34.95■■■■□ 3.19
RAPGEF3O95398 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC34.95■■■■□ 3.19
RAPGEF3O95398 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC34.95■■■■□ 3.19
RAPGEF3O95398 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.18
RAPGEF3O95398 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.18
RAPGEF3O95398 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC34.94■■■■□ 3.18
RAPGEF3O95398 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
RAPGEF3O95398 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC34.94■■■■□ 3.18
RAPGEF3O95398 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC34.94■■■■□ 3.18
RAPGEF3O95398 AC009086.3-201ENST00000623486 1008 ntBASIC34.94■■■■□ 3.18
RAPGEF3O95398 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
RAPGEF3O95398 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
RAPGEF3O95398 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
RAPGEF3O95398 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC34.93■■■■□ 3.18
RAPGEF3O95398 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC34.93■■■■□ 3.18
RAPGEF3O95398 ABHD17AP1-201ENST00000358206 933 ntBASIC34.93■■■■□ 3.18
RAPGEF3O95398 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC34.93■■■■□ 3.18
RAPGEF3O95398 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC34.92■■■■□ 3.18
RAPGEF3O95398 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC34.92■■■■□ 3.18
RAPGEF3O95398 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC34.92■■■■□ 3.18
RAPGEF3O95398 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC34.92■■■■□ 3.18
RAPGEF3O95398 AC096887.2-201ENST00000623443 1957 ntBASIC34.92■■■■□ 3.18
RAPGEF3O95398 AC097639.1-201ENST00000565519 1891 ntBASIC34.92■■■■□ 3.18
RAPGEF3O95398 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC34.92■■■■□ 3.18
RAPGEF3O95398 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC34.91■■■■□ 3.18
RAPGEF3O95398 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC34.91■■■■□ 3.18
RAPGEF3O95398 TK2-208ENST00000545043 1120 ntTSL 2 BASIC34.91■■■■□ 3.18
RAPGEF3O95398 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC34.91■■■■□ 3.18
RAPGEF3O95398 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
RAPGEF3O95398 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC34.9■■■■□ 3.18
RAPGEF3O95398 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC34.9■■■■□ 3.18
RAPGEF3O95398 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
RAPGEF3O95398 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC34.89■■■■□ 3.18
RAPGEF3O95398 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
RAPGEF3O95398 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC34.89■■■■□ 3.18
RAPGEF3O95398 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC34.89■■■■□ 3.18
RAPGEF3O95398 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC34.89■■■■□ 3.18
RAPGEF3O95398 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC34.89■■■■□ 3.18
RAPGEF3O95398 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC34.89■■■■□ 3.18
RAPGEF3O95398 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC34.88■■■■□ 3.17
RAPGEF3O95398 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC34.88■■■■□ 3.17
RAPGEF3O95398 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC34.88■■■■□ 3.17
RAPGEF3O95398 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC34.88■■■■□ 3.17
RAPGEF3O95398 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC34.88■■■■□ 3.17
RAPGEF3O95398 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC34.88■■■■□ 3.17
RAPGEF3O95398 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC34.88■■■■□ 3.17
RAPGEF3O95398 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC34.88■■■■□ 3.17
RAPGEF3O95398 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC34.87■■■■□ 3.17
RAPGEF3O95398 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC34.87■■■■□ 3.17
RAPGEF3O95398 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC34.87■■■■□ 3.17
RAPGEF3O95398 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
RAPGEF3O95398 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC34.87■■■■□ 3.17
RAPGEF3O95398 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC34.86■■■■□ 3.17
RAPGEF3O95398 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC34.86■■■■□ 3.17
RAPGEF3O95398 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC34.86■■■■□ 3.17
RAPGEF3O95398 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC34.86■■■■□ 3.17
RAPGEF3O95398 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC34.86■■■■□ 3.17
RAPGEF3O95398 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC34.86■■■■□ 3.17
RAPGEF3O95398 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC34.85■■■■□ 3.17
RAPGEF3O95398 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC34.85■■■■□ 3.17
RAPGEF3O95398 KRT18P14-201ENST00000534205 1250 ntBASIC34.85■■■■□ 3.17
RAPGEF3O95398 AC012414.1-201ENST00000556676 535 ntBASIC34.85■■■■□ 3.17
RAPGEF3O95398 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC34.84■■■■□ 3.17
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms