Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC22.51■■□□□ 1.19
TRIM13O60858 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRIM13O60858 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC22.51■■□□□ 1.19
TRIM13O60858 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRIM13O60858 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
TRIM13O60858 AL592295.1-201ENST00000400984 884 ntBASIC22.51■■□□□ 1.19
TRIM13O60858 AC018755.3-202ENST00000596210 929 ntBASIC22.51■■□□□ 1.19
TRIM13O60858 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRIM13O60858 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRIM13O60858 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRIM13O60858 AL117328.2-201ENST00000624617 1940 ntBASIC22.51■■□□□ 1.19
TRIM13O60858 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
TRIM13O60858 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC22.5■■□□□ 1.19
TRIM13O60858 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
TRIM13O60858 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TRIM13O60858 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC22.5■■□□□ 1.19
TRIM13O60858 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
TRIM13O60858 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
TRIM13O60858 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC22.5■■□□□ 1.19
TRIM13O60858 DUSP8P3-201ENST00000399571 1760 ntBASIC22.5■■□□□ 1.19
TRIM13O60858 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC22.5■■□□□ 1.19
TRIM13O60858 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
TRIM13O60858 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TRIM13O60858 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TRIM13O60858 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC22.49■■□□□ 1.19
TRIM13O60858 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
TRIM13O60858 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
TRIM13O60858 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
TRIM13O60858 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC22.49■■□□□ 1.19
TRIM13O60858 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
TRIM13O60858 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TRIM13O60858 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
TRIM13O60858 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TRIM13O60858 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22.48■■□□□ 1.19
TRIM13O60858 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
TRIM13O60858 AC087393.1-201ENST00000582896 145 ntBASIC22.48■■□□□ 1.19
TRIM13O60858 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
TRIM13O60858 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TRIM13O60858 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TRIM13O60858 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TRIM13O60858 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TRIM13O60858 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
TRIM13O60858 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
TRIM13O60858 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
TRIM13O60858 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
TRIM13O60858 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TRIM13O60858 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC22.47■■□□□ 1.19
TRIM13O60858 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC22.47■■□□□ 1.19
TRIM13O60858 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TRIM13O60858 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TRIM13O60858 AC233723.2-201ENST00000623798 2106 ntBASIC22.46■■□□□ 1.19
TRIM13O60858 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TRIM13O60858 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
TRIM13O60858 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
TRIM13O60858 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TRIM13O60858 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
TRIM13O60858 SPCS2P3-201ENST00000500401 656 ntBASIC22.46■■□□□ 1.19
TRIM13O60858 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
TRIM13O60858 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TRIM13O60858 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TRIM13O60858 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
TRIM13O60858 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TRIM13O60858 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
TRIM13O60858 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
TRIM13O60858 IDNK-203ENST00000405990 629 ntTSL 2 BASIC22.45■■□□□ 1.18
TRIM13O60858 AL592293.1-201ENST00000502889 1188 ntBASIC22.45■■□□□ 1.18
TRIM13O60858 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC22.45■■□□□ 1.18
TRIM13O60858 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TRIM13O60858 RNF126P1-201ENST00000567452 1320 ntBASIC22.45■■□□□ 1.18
TRIM13O60858 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC22.45■■□□□ 1.18
TRIM13O60858 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
TRIM13O60858 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
TRIM13O60858 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC22.45■■□□□ 1.18
TRIM13O60858 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
TRIM13O60858 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
TRIM13O60858 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
TRIM13O60858 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
TRIM13O60858 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
TRIM13O60858 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
TRIM13O60858 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC22.44■■□□□ 1.18
TRIM13O60858 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC22.44■■□□□ 1.18
TRIM13O60858 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC22.44■■□□□ 1.18
TRIM13O60858 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
TRIM13O60858 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
TRIM13O60858 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TRIM13O60858 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TRIM13O60858 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
TRIM13O60858 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC22.43■■□□□ 1.18
TRIM13O60858 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
TRIM13O60858 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
TRIM13O60858 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TRIM13O60858 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TRIM13O60858 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
TRIM13O60858 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
TRIM13O60858 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
TRIM13O60858 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
TRIM13O60858 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC22.42■■□□□ 1.18
TRIM13O60858 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC22.42■■□□□ 1.18
TRIM13O60858 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
TRIM13O60858 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms