Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 RNU1-114P-201ENST00000365297 166 ntBASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 GIMAP3P-201ENST00000495150 836 ntBASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 GREM1-201ENST00000560677 623 ntTSL 4 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 COX11-202ENST00000571584 1108 ntTSL 2 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 AL033527.5-201ENST00000641382 801 ntBASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
TRIM54Q9BYV2 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 AC126335.2-201ENST00000623362 4637 ntBASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 DUX4L47-201ENST00000566374 394 ntBASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 CTBP2P3-201ENST00000585629 1255 ntBASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 WFDC1-204ENST00000613603 549 ntBASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 HSPA7-201ENST00000445535 1927 ntBASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 AC041040.2-201ENST00000622926 2899 ntBASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM54Q9BYV2 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM54Q9BYV2 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.77□□□□□ -0.04
TRIM54Q9BYV2 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
TRIM54Q9BYV2 AC018529.2-202ENST00000611482 3087 ntBASIC14.77□□□□□ -0.04
TRIM54Q9BYV2 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM54Q9BYV2 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms