Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 AC021305.1-201ENST00000520656 1514 ntBASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 AC006987.1-201ENST00000413610 527 ntBASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 RBM4-207ENST00000506523 654 ntTSL 3 BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 SKA2-205ENST00000580541 689 ntTSL 3 BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 ODCP-201ENST00000459650 1639 ntBASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 AL109809.1-201ENST00000418979 1367 ntBASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 SARS-202ENST00000369923 1882 ntTSL 5 BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 HNRNPA1P58-201ENST00000403629 610 ntBASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 BX679664.3-201ENST00000414070 555 ntBASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 AC113935.1-201ENST00000471722 555 ntBASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 FOXN3-AS2-201ENST00000554071 1262 ntBASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 ABHD17AP9-201ENST00000561925 548 ntBASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 SNORD3B-1-201ENST00000577988 758 ntBASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK3Q9BYB0 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 AC092862.1-201ENST00000541534 533 ntBASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 MIR6746-201ENST00000620971 63 ntBASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms