Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC036164.1-201ENST00000570544 333 ntBASIC16.16■□□□□ 0.18
CCDC42Q96M95 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.16■□□□□ 0.18
CCDC42Q96M95 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC42Q96M95 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC42Q96M95 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC16.16■□□□□ 0.18
CCDC42Q96M95 KRT8P22-201ENST00000562317 1415 ntBASIC16.16■□□□□ 0.18
CCDC42Q96M95 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC16.16■□□□□ 0.18
CCDC42Q96M95 AC016397.2-201ENST00000624848 1985 ntBASIC16.16■□□□□ 0.18
CCDC42Q96M95 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
CCDC42Q96M95 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CCDC42Q96M95 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC42Q96M95 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC42Q96M95 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC42Q96M95 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC42Q96M95 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC42Q96M95 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC42Q96M95 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CCDC42Q96M95 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC16.15■□□□□ 0.18
CCDC42Q96M95 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CCDC42Q96M95 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC42Q96M95 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC42Q96M95 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC42Q96M95 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC42Q96M95 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC42Q96M95 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC42Q96M95 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CCDC42Q96M95 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC42Q96M95 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CCDC42Q96M95 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC42Q96M95 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC42Q96M95 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.15■□□□□ 0.18
CCDC42Q96M95 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CCDC42Q96M95 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.15■□□□□ 0.18
CCDC42Q96M95 AC241585.1-201ENST00000433527 519 ntBASIC16.15■□□□□ 0.18
CCDC42Q96M95 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.15■□□□□ 0.18
CCDC42Q96M95 AL589987.1-201ENST00000453380 819 ntBASIC16.15■□□□□ 0.18
CCDC42Q96M95 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC42Q96M95 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.15■□□□□ 0.18
CCDC42Q96M95 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.15■□□□□ 0.18
CCDC42Q96M95 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC42Q96M95 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC42Q96M95 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.15■□□□□ 0.18
CCDC42Q96M95 SRD5A3P1-201ENST00000603021 949 ntBASIC16.15■□□□□ 0.18
CCDC42Q96M95 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC42Q96M95 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC42Q96M95 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC42Q96M95 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CCDC42Q96M95 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC42Q96M95 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC42Q96M95 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
CCDC42Q96M95 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC42Q96M95 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC42Q96M95 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.15■□□□□ 0.18
CCDC42Q96M95 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC42Q96M95 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CCDC42Q96M95 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC42Q96M95 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
CCDC42Q96M95 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC42Q96M95 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC42Q96M95 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC42Q96M95 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
CCDC42Q96M95 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC42Q96M95 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC42Q96M95 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC42Q96M95 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC42Q96M95 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC42Q96M95 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC16.14■□□□□ 0.17
CCDC42Q96M95 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC42Q96M95 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
CCDC42Q96M95 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC42Q96M95 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC42Q96M95 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC16.14■□□□□ 0.17
CCDC42Q96M95 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC42Q96M95 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC42Q96M95 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
CCDC42Q96M95 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC42Q96M95 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC42Q96M95 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.14■□□□□ 0.17
CCDC42Q96M95 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC16.14■□□□□ 0.17
CCDC42Q96M95 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.14■□□□□ 0.17
CCDC42Q96M95 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.14■□□□□ 0.17
CCDC42Q96M95 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.14■□□□□ 0.17
CCDC42Q96M95 AC009477.1-201ENST00000452936 217 ntBASIC16.14■□□□□ 0.17
CCDC42Q96M95 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC42Q96M95 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC42Q96M95 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC42Q96M95 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.14■□□□□ 0.17
CCDC42Q96M95 AC009407.1-201ENST00000568958 598 ntBASIC16.14■□□□□ 0.17
CCDC42Q96M95 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC42Q96M95 AL049840.4-201ENST00000602422 811 ntBASIC16.14■□□□□ 0.17
CCDC42Q96M95 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC42Q96M95 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC42Q96M95 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC42Q96M95 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC42Q96M95 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC42Q96M95 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.17
CCDC42Q96M95 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC42Q96M95 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC42Q96M95 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC42Q96M95 AC090505.1-201ENST00000430515 1834 ntBASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms